genome.fa.s940.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold940
Parameters: 2 7 7 80 10 50 1000
Length:  67133

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2966--3047	28	2.9	28	80	7	96	26	17	31	24	1.97
3025--3367	105	3.3	104	71	12	286	31	11	27	29	1.92
3030--3200	51	3.3	51	79	4	198	32	11	26	29	1.92
3183--3258	27	2.8	28	88	6	102	21	21	34	23	1.97
5725--5750	13	2.0	13	100	0	52	38	15	15	30	1.88
5704--5770	33	2.0	33	88	0	98	43	16	14	25	1.86
5790--5857	19	3.9	18	76	23	83	38	14	11	35	1.83
5812--5836	13	1.9	13	100	0	50	32	16	16	36	1.90
5793--5855	32	2.0	32	96	0	117	36	15	12	34	1.86
5913--5969	21	2.7	21	97	0	105	36	19	10	33	1.86
6312--6368	27	2.1	27	80	6	62	54	1	1	42	1.21
6330--6399	19	3.5	21	74	20	60	62	2	0	34	1.10
6332--6393	18	3.3	19	77	16	58	62	3	0	33	1.11
7430--7498	31	2.3	31	84	2	86	53	11	7	27	1.63
7989--8020	2	16.0	2	100	0	64	0	50	0	50	1.00
8994--9178	50	3.7	50	87	1	246	33	15	20	30	1.94
9336--9364	14	2.0	15	93	6	51	13	17	0	68	1.20
13558--13794	50	4.7	50	92	0	384	30	16	22	30	1.96
13799--13833	9	3.7	9	85	14	52	42	8	11	37	1.72
13794--13833	20	2.0	20	100	0	80	40	10	10	40	1.72
13794--13826	11	3.2	11	83	16	52	39	9	9	42	1.68
16468--16501	17	1.9	18	88	5	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21938--21972	3	11.7	3	100	0	70	31	0	0	68	0.90
22350--22512	15	11.5	14	67	27	71	54	0	3	42	1.16
22335--22512	29	6.2	28	69	23	90	53	0	2	42	1.19
22350--22385	14	2.5	15	90	4	56	55	0	2	41	1.14
22432--22517	28	3.0	30	80	11	85	58	0	3	38	1.15
22448--22525	29	2.7	30	81	13	85	57	0	2	39	1.12
22420--22525	48	2.3	47	80	12	112	55	0	2	41	1.14
22849--22885	17	2.2	16	90	4	56	62	0	0	37	0.96
25525--25566	17	2.5	17	80	0	57	45	4	0	50	1.23
27773--27829	22	2.4	24	80	14	64	45	0	0	54	0.99
27773--27829	23	2.4	24	80	14	64	45	0	0	54	0.99
29274--29303	15	1.9	16	93	6	53	63	0	0	36	0.95
29271--29321	16	3.2	17	83	8	63	68	0	0	31	0.90
29775--29858	20	4.6	20	69	23	60	57	0	0	42	0.99
29802--29867	26	2.6	25	81	13	73	60	0	0	39	0.97
30111--30221	19	5.7	18	74	24	77	54	0	0	45	0.99
30149--30214	18	4.0	16	77	14	55	53	0	0	46	1.00
30112--30227	58	1.9	62	81	16	147	55	0	0	44	0.99
30162--30224	24	2.7	24	74	13	60	55	0	0	44	0.99
33306--33371	27	2.5	26	76	14	64	54	0	3	42	1.15
33416--33469	18	3.0	17	76	10	54	72	1	5	20	1.14
36135--36187	17	3.0	17	86	5	61	52	1	0	45	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36407--36438	13	2.4	14	90	10	50	28	0	6	65	1.16
36461--36530	37	1.9	36	82	8	88	45	0	0	54	0.99
36559--36603	22	2.1	21	83	4	54	51	11	0	37	1.38
37698--37747	22	2.4	20	80	6	55	52	0	10	38	1.35
37717--37763	18	2.5	19	82	10	60	48	0	8	42	1.33
39908--39979	22	3.2	22	74	16	76	65	1	1	31	1.10
40549--40591	20	2.1	21	91	8	72	27	0	0	72	0.85
40552--40590	12	3.2	12	85	7	53	23	0	0	76	0.78
42332--42371	21	2.0	20	85	5	53	55	0	0	45	0.99
47065--47091	2	13.5	2	100	0	54	48	0	0	51	1.00
47632--47715	23	3.9	22	75	15	68	45	0	0	54	0.99
47619--47689	16	4.4	16	72	20	58	49	0	0	50	1.00
47653--47763	14	8.3	14	67	22	53	39	0	0	60	0.97
48463--48532	32	2.2	32	87	5	99	58	1	2	37	1.22
49355--49398	20	2.2	20	84	8	54	43	0	2	54	1.12
49379--49409	11	2.7	12	90	10	55	38	0	6	54	1.26
49566--49615	18	2.8	18	80	14	68	56	0	2	42	1.11
49587--49631	18	2.5	18	85	0	54	57	0	0	42	0.98
49851--49889	16	2.3	17	86	8	53	46	0	0	53	1.00
50326--50381	28	2.0	28	86	6	78	46	0	0	53	1.00
51002--51054	20	2.7	20	84	0	70	54	1	0	43	1.11
50974--51084	40	3.1	34	74	20	91	50	0	0	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51136--51198	20	3.4	19	79	12	69	47	0	0	52	1.00
51157--51194	11	3.2	12	86	13	53	39	0	0	60	0.97
51494--51518	2	12.5	2	100	0	50	48	0	0	52	1.00
51965--52012	23	2.1	23	84	7	62	52	2	0	45	1.12
51998--52044	24	2.0	24	91	0	76	36	0	0	63	0.94
52409--52517	31	3.6	28	79	11	92	53	1	2	42	1.26
52438--52516	31	2.7	29	86	4	95	55	0	2	41	1.13
53226--53266	21	2.0	21	90	9	66	43	0	0	56	0.99
54288--54329	21	1.9	23	85	9	61	47	11	0	40	1.40
54712--54750	21	1.9	21	89	5	62	71	0	0	28	0.86
54745--54780	16	2.1	16	90	10	54	47	0	0	52	1.00
54978--55059	39	2.1	40	82	11	98	56	0	0	43	0.99
63956--63988	15	2.2	15	94	0	57	57	0	0	42	0.98
63993--64030	20	1.9	20	94	0	67	28	0	0	71	0.87
64414--64455	21	1.9	23	85	9	61	40	0	11	47	1.40

Tables:   1

The End!