genome.fa.s975.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold975
Parameters: 2 7 7 80 10 50 1000
Length:  287369

Tables:   1   2   

This is table  2  of  2  ( 186 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166466--167490	44	23.6	44	70	10	514	20	23	14	40	1.90
166960--167522	132	4.3	132	82	3	614	20	23	14	41	1.89
167631--167683	16	3.3	16	83	0	70	41	35	18	3	1.69
167694--167739	16	2.9	16	83	6	58	47	23	17	10	1.79
171399--171586	99	1.9	100	83	5	247	36	6	7	48	1.58
171995--172051	16	3.6	16	80	0	51	47	26	14	12	1.79
172044--172172	16	8.2	16	78	5	104	34	34	21	9	1.86
172048--172174	32	4.0	32	75	9	118	33	34	22	10	1.88
180059--180441	132	2.9	132	82	4	452	28	26	9	35	1.88
181035--181085	20	2.5	21	87	3	77	37	7	19	35	1.81
183613--183640	14	2.0	14	100	0	56	57	7	0	35	1.26
184391--184444	20	2.7	20	88	0	72	33	16	16	33	1.92
190610--190635	13	2.0	13	100	0	52	30	15	15	38	1.88
190731--190780	21	2.4	22	83	9	61	32	20	0	48	1.50
194467--194529	33	1.9	33	87	6	92	34	12	17	34	1.88
200692--200731	20	2.0	21	90	5	64	40	10	17	32	1.83
202154--202222	34	2.1	33	86	2	93	24	23	20	31	1.98
203171--203197	13	2.1	13	100	0	54	29	14	14	40	1.86
204754--204793	6	6.8	6	88	5	64	62	0	0	37	0.95
204754--204793	18	2.3	17	95	4	71	62	0	0	37	0.95
205214--205242	15	1.9	15	100	0	58	20	6	0	72	1.07
205801--205846	25	1.9	25	83	16	62	52	17	6	23	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206764--206802	18	2.2	18	90	4	62	43	0	2	53	1.14
207793--207844	21	2.5	20	78	9	59	34	5	7	51	1.54
208403--208427	6	4.2	6	100	0	50	84	0	16	0	0.63
213877--213917	18	2.2	20	83	16	52	48	4	7	39	1.52
214032--214102	28	2.4	30	75	17	76	66	4	5	23	1.31
221229--221267	21	2.0	21	85	10	55	28	56	5	10	1.54
225808--225873	33	2.0	33	90	0	105	40	16	18	24	1.90
235124--235150	13	2.1	13	100	0	54	29	14	14	40	1.86
235105--235169	32	2.0	32	87	3	94	29	13	13	43	1.83
235134--235189	19	2.9	19	81	2	67	33	14	14	37	1.86
235235--235287	13	4.5	13	73	26	64	32	13	16	37	1.88
235219--235287	33	2.1	33	91	5	113	30	13	18	37	1.89
241444--241470	13	2.1	13	100	0	54	29	14	14	40	1.86
245278--245626	79	4.4	79	77	4	310	36	13	21	27	1.91
247015--247051	15	2.6	15	87	8	51	78	0	13	8	0.96
248639--248824	97	1.9	97	84	4	250	39	10	23	27	1.87
248670--248858	97	1.9	97	81	8	224	40	11	20	28	1.86
254189--255811	814	2.0	814	99	0	3228	34	14	24	26	1.94
256092--256119	13	2.2	13	100	0	56	39	17	14	28	1.89
256166--256191	13	2.0	13	100	0	52	30	15	15	38	1.88
256924--257935	39	22.3	50	66	19	188	28	18	26	26	1.98
257047--257262	87	2.5	88	83	0	263	28	19	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257134--257432	139	2.2	135	86	3	402	27	20	26	25	1.99
257233--257343	52	2.2	52	87	9	160	27	19	27	25	1.99
257322--257877	48	12.9	39	68	18	261	26	19	27	27	1.99
257274--257877	87	6.9	87	92	0	924	26	19	26	26	1.99
257047--257519	226	2.1	222	88	3	698	27	19	26	26	1.99
257933--258472	33	16.8	33	79	10	555	35	12	32	19	1.90
257946--258472	194	2.8	193	89	3	773	35	12	32	19	1.90
258292--258349	27	2.2	26	87	6	89	32	12	32	22	1.91
258351--258663	65	5.0	61	79	10	219	34	13	29	23	1.93
258413--258765	31	11.0	32	77	11	257	33	14	28	23	1.94
258460--258767	31	9.8	30	80	8	276	33	14	28	24	1.94
258385--258760	65	6.0	63	78	10	319	33	14	28	23	1.94
258385--258760	193	2.0	187	83	7	481	33	14	28	23	1.94
260038--260072	14	2.5	14	90	0	52	0	0	17	82	0.66
266873--266903	15	2.1	15	100	0	62	54	0	12	32	1.38
268876--268936	13	4.9	12	77	16	54	6	13	1	78	1.01
268892--268938	21	2.2	22	84	3	60	6	12	2	78	1.02
275405--275438	14	2.4	14	85	14	52	29	11	14	44	1.81
275255--275563	170	1.8	170	92	0	528	28	9	15	46	1.76
283560--283821	83	3.2	83	98	0	515	32	11	19	36	1.88
283860--283915	21	2.6	22	94	5	105	37	10	25	26	1.88
284043--284083	21	2.0	21	85	9	57	36	9	14	39	1.79

Tables:   1   2

The End!