genome.fa.s983.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold983
Parameters: 2 7 7 80 10 50 1000
Length:  72880

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2417--2491	28	2.5	30	75	16	75	40	1	1	57	1.16
2510--2543	16	2.2	15	89	5	50	41	0	2	55	1.15
5217--5248	2	16.0	2	100	0	64	50	0	0	50	1.00
6604--6645	2	21.0	2	100	0	84	50	0	0	50	1.00
7644--7699	24	2.3	24	90	0	85	26	17	12	42	1.85
8017--8047	4	7.8	4	100	0	62	22	0	0	77	0.77
8859--8925	30	2.2	29	80	12	73	28	0	1	70	0.96
8826--8909	16	4.9	16	70	18	55	29	1	1	67	1.05
8892--8926	13	2.6	14	95	4	63	31	0	0	68	0.90
9268--9297	15	1.9	16	93	6	53	60	0	0	40	0.97
9255--9314	27	2.2	28	85	8	79	55	0	0	45	0.99
9610--9673	28	2.3	27	75	21	62	35	3	7	53	1.46
9699--9775	38	2.0	39	87	5	113	45	3	5	45	1.44
9743--9807	32	2.1	32	88	2	96	44	4	4	46	1.44
9965--10010	13	3.4	14	82	8	60	54	2	0	43	1.12
10138--10218	3	28.0	3	86	7	105	61	1	0	37	1.04
10412--10457	13	3.3	13	80	16	56	36	0	2	60	1.09
10403--10468	29	2.4	28	76	14	66	48	1	1	48	1.20
11032--11073	15	2.8	15	75	13	50	57	0	0	42	0.99
11490--11557	28	2.4	28	81	16	86	22	5	16	55	1.62
14123--14168	21	2.1	22	84	4	58	30	19	30	19	1.97
16073--16134	28	2.2	28	91	8	108	17	4	20	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16131--16176	24	1.9	24	95	0	83	19	6	28	45	1.75
17340--17402	23	2.7	23	73	9	56	49	0	1	49	1.10
17360--17404	24	2.0	23	82	8	56	46	0	0	53	1.00
19626--19659	16	2.2	16	89	5	52	44	5	2	47	1.42
20996--21053	24	2.4	25	80	11	68	55	0	0	44	0.99
22223--22267	15	2.7	18	74	22	53	46	0	0	53	1.00
22322--22353	2	16.5	2	93	6	57	50	0	0	50	1.00
24366--24398	12	2.6	13	90	9	59	60	0	0	39	0.97
24363--24450	18	5.1	17	72	24	60	60	0	0	39	0.97
24387--24438	20	2.5	20	81	3	59	59	0	0	40	0.97
24373--24445	31	2.4	31	86	9	96	60	0	0	39	0.97
24433--24473	15	2.7	15	81	11	57	46	0	0	53	1.00
26630--26689	18	3.4	19	77	11	65	60	0	0	40	0.97
27430--27780	176	2.0	176	85	1	479	46	10	18	25	1.80
28097--28156	28	2.2	27	88	5	86	18	13	16	51	1.76
32010--32228	108	2.0	108	92	1	368	23	25	14	36	1.92
36048--36073	13	2.0	13	100	0	52	30	15	15	38	1.88
38458--38504	21	2.3	21	76	23	55	42	4	19	34	1.70
40716--40746	15	2.1	15	93	0	53	12	22	16	48	1.80
44787--44812	13	2.0	13	100	0	52	30	15	15	38	1.88
45277--45313	2	18.5	2	94	0	65	45	0	0	54	1.00
47286--48964	49	34.7	49	85	3	2249	30	17	26	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47286--48964	722	2.3	722	97	1	3160	30	17	26	25	1.97
48973--49118	33	4.4	34	93	4	228	17	19	34	28	1.95
49104--49545	33	13.6	33	79	10	276	30	14	33	21	1.93
49235--49360	27	4.2	28	83	12	128	28	13	36	21	1.91
49151--49545	67	6.1	62	79	14	283	30	14	34	21	1.93
49202--49607	31	12.9	30	80	11	229	29	15	33	21	1.94
49203--49607	93	4.3	93	79	11	333	28	15	33	21	1.94
50609--50648	13	2.9	13	88	7	53	0	10	5	85	0.75
55711--55738	11	2.5	11	100	0	56	10	0	64	25	1.26
58669--59049	169	2.2	170	81	6	421	36	14	26	22	1.93
58953--60582	49	33.7	49	85	3	2160	30	17	26	25	1.97
59000--60582	722	2.2	722	98	0	3049	30	17	26	25	1.97
60591--60736	33	4.4	34	93	4	228	17	19	34	28	1.95
60722--61101	33	11.6	33	78	11	308	30	13	34	21	1.92
60722--61163	93	4.5	97	78	12	374	30	14	33	21	1.93
60756--61163	67	6.4	62	79	14	300	29	14	34	21	1.93
60820--61225	31	12.9	30	80	11	229	29	15	33	22	1.94
60821--61225	93	4.3	93	80	11	342	28	15	33	22	1.94
62226--62265	13	2.9	13	88	7	53	0	10	5	85	0.75
67328--67355	11	2.5	11	100	0	56	10	0	64	25	1.26
69650--69674	13	1.9	13	100	0	50	32	16	16	36	1.90
70309--70444	28	5.0	28	71	15	113	30	33	19	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70452--70510	27	2.2	27	90	3	93	22	33	10	33	1.87
70488--70611	34	3.7	32	77	15	110	20	33	11	34	1.89
70831--71050	86	2.5	86	89	5	311	29	25	16	29	1.97
71007--71370	100	3.8	97	77	10	309	24	25	16	33	1.96
71004--71318	46	6.6	49	78	10	323	24	25	17	32	1.97
72174--72223	18	2.7	19	78	3	57	36	16	18	30	1.92
72270--72297	13	2.2	13	100	0	56	28	14	17	39	1.89

Tables:   1

The End!