genome.fa.s990.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold990
Parameters: 2 7 7 80 10 50 1000
Length:  49787

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4796--4849	20	2.7	20	91	5	83	31	12	18	37	1.89
5587--7493	475	4.0	473	80	6	1986	32	17	12	36	1.88
7078--7912	420	2.0	418	82	4	1011	33	17	12	36	1.88
7486--10134	474	5.6	476	83	4	3202	31	18	13	36	1.90
7486--10134	950	2.8	946	88	1	3707	31	18	13	36	1.90
10502--10699	48	4.1	48	85	1	245	20	22	19	37	1.94
10452--10699	96	2.6	96	89	0	370	20	22	18	37	1.94
10735--11301	44	12.9	44	70	9	314	20	24	15	39	1.91
10733--10896	89	1.8	89	92	0	274	19	23	15	42	1.89
10750--11301	133	4.2	132	75	8	469	20	24	15	39	1.91
10879--11299	175	2.4	177	80	4	440	20	24	15	38	1.92
10788--11301	88	5.8	88	75	5	387	20	24	15	39	1.91
11380--11615	42	5.6	42	78	9	239	18	35	13	32	1.91
11398--11624	84	2.7	84	82	2	294	18	34	15	31	1.92
14126--14211	24	3.8	24	70	17	76	40	2	46	10	1.51
14117--14235	42	2.8	42	90	0	184	42	2	47	8	1.47
19344--20059	158	4.5	159	68	10	392	31	18	13	37	1.89
25093--25224	42	3.1	42	87	2	167	10	40	0	47	1.43
25139--25215	12	6.9	12	73	21	53	12	42	0	44	1.43
25143--25215	24	3.3	24	74	21	95	13	42	0	43	1.44
25134--25194	9	7.1	9	72	10	56	13	40	0	45	1.43
26487--27505	475	2.1	476	87	2	1472	31	18	13	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27655--27705	23	2.1	24	89	7	77	47	7	5	39	1.57
27817--27841	13	1.9	13	100	0	50	32	16	16	36	1.90
27796--27859	32	2.0	32	84	9	85	29	14	15	40	1.86
28431--28556	34	3.8	34	83	9	147	33	12	23	30	1.92
29422--31996	159	16.2	157	66	12	558	32	18	13	35	1.90
32012--32683	159	4.2	158	66	13	426	32	17	14	35	1.91
32012--32800	159	5.0	156	68	13	396	32	16	14	35	1.90
28817--37252	476	17.8	476	85	2	9838	32	18	13	35	1.90
35688--36880	159	7.5	157	64	14	415	32	17	13	35	1.89
36577--38331	789	2.2	787	78	6	1651	31	18	13	36	1.90
39379--42788	159	21.5	159	66	14	780	31	18	13	37	1.89
37196--41411	476	8.9	475	86	4	4568	30	17	13	37	1.90
39676--41009	317	4.2	317	69	10	997	30	17	13	37	1.89
41459--44105	474	5.6	474	80	5	2729	31	18	13	36	1.89
45676--45866	104	1.9	104	88	2	296	5	41	42	10	1.61
45772--45968	63	3.1	63	69	12	188	4	39	46	9	1.57
46029--46150	64	1.9	64	91	0	199	13	22	45	18	1.83
46489--46672	102	1.8	101	88	8	286	8	40	40	9	1.69
46583--46786	64	3.2	59	73	21	155	8	37	45	8	1.66
45012--46923	818	2.3	816	82	7	2271	13	34	39	12	1.83

Tables:   1

The End!