Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010092.1 Corchorus capsularis cultivar CVL-1 contig10113, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8308

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
544--615
31
2.4
31
84
9
87
36
11
9
43
1.73
1653--1728
31
2.6
30
76
14
86
32
7
26
32
1.85
3083--3136
22
2.5
22
84
6
65
38
5
11
44
1.63
3203--3255
22
2.4
22
83
3
61
37
18
11
32
1.87
3282--3363
22
3.7
22
77
3
67
35
12
13
39
1.82
3309--3409
23
4.5
23
83
6
100
38
13
8
38
1.77
3309--3409
46
2.2
45
85
3
132
38
13
8
38
1.77
3309--3594
22
13.3
22
71
12
132
35
14
8
41
1.75
3709--3869
22
7.4
22
79
5
157
34
14
9
42
1.77
3678--3777
44
2.3
45
81
11
118
34
11
7
48
1.66
3709--4114
22
18.4
22
68
18
93
33
16
9
40
1.80
4150--4355
22
9.3
22
76
5
146
39
16
9
34
1.81
4204--4322
22
5.5
22
85
6
154
35
15
12
36
1.86
4150--4346
66
3.0
66
83
5
238
38
16
9
36
1.81
4520--4557
19
2.0
20
85
15
53
63
2
5
28
1.30
4870--4928
31
1.9
31
86
6
84
50
5
13
30
1.63
5330--5619
107
2.8
106
91
2
451
40
9
7
42
1.67
5349--5660
107
3.0
107
85
6
329
42
8
8
40
1.66

Tables:   1

The End!