Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010189.1 Corchorus capsularis cultivar CVL-1 contig10210, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30845

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4181--4211
8
3.9
8
95
0
53
12
0
0
87
0.55
4284--4317
8
4.1
8
85
7
50
23
2
14
58
1.50
5241--5352
30
3.6
30
79
11
100
9
26
39
24
1.86
5264--5352
33
2.7
33
85
11
105
11
25
39
23
1.88
11709--11785
34
2.2
35
93
4
129
11
25
16
45
1.82
13957--14519
53
10.5
53
91
2
842
46
9
18
24
1.79
14644--14723
9
8.9
9
76
14
67
57
1
27
13
1.44
14648--14747
19
5.6
18
73
18
84
55
2
29
14
1.50
14656--14747
36
2.6
36
89
6
152
54
2
29
14
1.52
14975--15155
58
3.1
58
79
10
224
46
9
17
26
1.78
26449--26751
113
2.7
111
89
3
428
33
23
21
22
1.97
26715--26785
32
2.2
32
94
0
124
21
29
26
22
1.99
26602--27075
145
3.3
145
96
0
851
29
23
22
24
1.99
26837--26930
32
3.0
31
87
4
91
24
27
26
21
1.99
26860--26930
32
2.2
32
97
0
133
22
28
26
22
1.99
27005--27090
32
2.7
32
98
0
163
22
25
27
24
1.99
28230--28310
29
2.7
30
77
21
98
24
8
22
44
1.81
28457--28496
17
2.3
19
79
16
50
5
20
5
70
1.26

Tables:   1

The End!