Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010199.1 Corchorus capsularis cultivar CVL-1 contig10220, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90433

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1627--1678
24
2.1
25
89
3
79
32
21
15
30
1.94
23421--23455
12
2.9
12
82
0
52
14
17
11
57
1.66
25379--25929
22
25.6
22
68
14
185
35
15
9
38
1.81
25677--25745
23
3.0
23
82
4
86
39
17
7
36
1.77
25685--25770
23
3.7
23
77
9
86
39
12
8
39
1.73
25677--25768
46
2.0
46
82
4
114
39
15
7
38
1.76
25732--25845
39
2.9
39
76
7
99
36
11
9
42
1.74
26010--26409
22
18.0
22
67
14
126
34
15
9
40
1.81
26440--26504
22
2.9
22
79
4
67
40
21
7
30
1.81
26440--26581
68
2.1
66
80
5
151
38
19
9
32
1.83
26447--26578
22
6.0
21
73
9
84
37
18
9
34
1.84
26713--26806
38
2.6
36
85
6
129
55
11
20
12
1.68
26911--26969
31
1.9
32
89
6
95
50
5
13
30
1.63
45440--45475
17
2.1
17
100
0
72
27
5
5
61
1.41
47355--47436
31
2.6
31
96
0
155
18
24
30
26
1.98
47576--47613
18
2.1
18
100
0
76
28
15
21
34
1.94
51606--51630
6
4.2
6
100
0
50
0
16
52
32
1.44
66340--66697
185
2.0
179
89
3
554
25
12
13
48
1.78
84773--84805
1
33.0
1
100
0
66
100
0
0
0
0.00
89701--89738
11
3.5
11
89
10
51
39
0
2
57
1.12

Tables:   1

The End!