Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010250.1 Corchorus capsularis cultivar CVL-1 contig10271, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120739

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8--43
2
18.0
2
100
0
72
50
0
0
50
1.00
378--1938
334
4.7
330
77
7
1143
33
14
16
36
1.89
1929--1958
2
15.0
2
100
0
60
50
0
0
50
1.00
2896--3138
119
2.0
119
99
0
477
25
15
17
41
1.89
8433--8466
17
2.0
17
88
0
50
32
26
20
20
1.97
12164--13192
332
3.1
327
80
5
1138
38
15
13
32
1.86
13481--15122
330
5.0
330
78
8
1537
37
15
14
32
1.88
17732--17761
4
7.5
4
100
0
60
0
23
0
76
0.78
21175--21337
81
2.0
81
100
0
326
26
12
14
46
1.80
41705--41752
24
2.0
24
100
0
96
54
8
12
25
1.65
42704--42741
18
2.1
19
90
5
60
26
23
28
21
1.99
45707--45750
6
7.3
6
78
0
52
31
2
65
0
1.05
45701--45756
12
4.7
12
86
0
76
32
1
66
0
1.03
57871--57898
2
14.0
2
100
0
56
50
0
0
50
1.00
65139--65173
2
17.5
2
100
0
70
51
0
0
48
1.00
79268--79411
72
2.0
72
100
0
288
41
9
11
37
1.74
79527--79580
26
2.1
26
100
0
108
25
7
12
53
1.65
79869--79897
2
14.5
2
100
0
58
48
0
0
51
1.00
80504--80562
28
2.1
28
81
6
66
59
10
3
27
1.46
81291--81328
16
2.3
17
90
4
60
34
5
0
60
1.19
81647--81705
30
2.0
30
89
0
91
59
18
3
18
1.52
82947--83365
228
1.8
228
92
1
705
28
17
18
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86165--86201
16
2.3
16
100
0
74
51
8
10
29
1.65
100997--101145
48
3.1
48
96
0
273
31
18
15
34
1.92
111542--111577
19
1.9
18
88
5
54
55
22
5
16
1.62
113209--113298
46
2.0
46
100
0
180
56
16
8
17
1.65
118177--118288
32
3.5
32
96
2
208
39
13
11
35
1.81
118545--118916
125
3.0
125
95
1
678
35
20
22
22
1.96

Tables:   1

The End!