Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010281.1 Corchorus capsularis cultivar CVL-1 contig10302, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4919

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--760
31
24.9
31
71
12
346
30
30
27
11
1.91
311--502
32
6.1
32
83
4
228
30
32
29
8
1.87
306--502
95
2.1
95
83
5
247
30
31
28
8
1.86
555--642
32
2.9
27
91
8
86
27
31
29
11
1.91
658--1168
246
2.1
244
90
0
797
32
28
25
14
1.94
898--1017
31
3.9
31
80
0
123
30
30
27
11
1.92
967--1139
90
1.9
89
84
10
228
30
28
24
16
1.97
1793--2312
62
8.3
63
76
8
370
30
30
28
10
1.91
1793--2301
31
16.3
31
77
7
334
30
30
28
10
1.90
2255--2491
94
2.6
93
83
8
306
31
28
26
13
1.94
2725--3321
32
19.2
32
78
8
608
29
32
29
9
1.88
2890--3005
25
4.2
25
74
23
106
26
34
31
7
1.85
2733--3321
63
9.5
63
79
9
581
29
32
29
9
1.88
3355--3488
32
4.2
32
79
5
128
32
29
26
11
1.92
3171--3552
186
2.1
185
84
3
500
31
29
26
12
1.92
3450--3677
91
2.5
93
82
3
282
31
29
23
15
1.95
4273--4810
31
17.2
32
80
5
539
28
30
30
10
1.90
4346--4680
184
1.8
185
88
1
512
28
31
28
10
1.91
4281--4810
63
8.5
63
78
8
451
28
30
30
10
1.90
4314--4716
216
1.9
216
85
5
564
28
31
29
10
1.90
4282--4747
247
1.9
248
87
4
699
28
30
30
10
1.90
4842--4919
32
2.5
32
85
2
95
26
33
30
8
1.87

Tables:   1

The End!