genome.fa.s10388.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010388.1 Corchorus capsularis cultivar CVL-1 contig10409, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156398

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22--2822	322	8.7	323	85	3	3484	33	13	16	36	1.88
22--2534	955	2.6	953	86	3	3348	33	13	16	36	1.88
4634--4696	22	3.0	22	93	4	103	46	23	26	3	1.68
4678--4801	59	2.1	59	100	0	248	36	24	33	6	1.81
5551--5680	45	2.9	45	91	0	206	30	18	26	24	1.98
12279--12378	49	2.0	49	98	0	191	35	18	9	38	1.82
17785--17816	1	32.0	1	100	0	64	100	0	0	0	0.00
18051--18093	21	2.0	21	100	0	86	34	18	9	37	1.83
27215--27264	27	2.0	24	95	0	64	50	24	8	18	1.73
31342--31407	18	3.5	18	69	18	62	43	30	3	22	1.68
31334--31413	39	2.1	39	97	0	151	43	26	5	25	1.74
31462--31521	28	2.1	28	100	0	120	63	23	3	10	1.40
31885--31916	2	16.0	2	100	0	64	50	0	0	50	1.00
33846--33873	3	9.3	3	100	0	56	67	0	0	32	0.91
33953--33991	20	2.0	19	85	5	51	46	0	12	41	1.42
36475--36637	60	2.7	60	94	1	274	35	20	19	25	1.95
36535--36638	31	3.4	31	70	15	108	36	20	19	24	1.95
36506--36606	29	3.4	29	70	15	98	33	20	19	25	1.97
36669--36825	56	2.7	56	92	3	242	26	19	17	36	1.94
39505--39533	12	2.4	12	100	0	58	0	13	31	55	1.39
42882--43943	354	3.0	354	96	0	1928	20	14	18	46	1.84
58599--58628	4	7.5	4	100	0	60	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58659--58708	23	2.1	24	85	10	68	66	8	22	4	1.35
60906--60942	18	2.1	18	89	0	56	56	0	10	32	1.34
62214--62261	23	2.1	22	92	3	78	47	6	4	41	1.48
62214--62261	11	4.3	11	84	10	62	47	6	4	41	1.48
65524--65572	25	2.0	25	91	0	80	34	20	32	12	1.90
66472--66606	20	6.8	20	67	21	77	47	0	0	51	1.11
66466--66612	9	16.2	9	67	21	67	46	0	0	51	1.10
66521--66609	46	1.9	47	88	2	135	50	1	0	48	1.08
67018--67055	20	1.9	20	100	0	76	31	18	7	42	1.79
87847--87884	2	20.0	2	84	10	53	52	0	2	44	1.14
104889--104926	12	3.5	11	86	13	53	68	5	26	0	1.11
113418--113449	2	16.0	2	100	0	64	50	0	0	50	1.00
113821--113863	14	2.9	15	75	6	52	53	6	6	32	1.55
116592--116690	48	2.1	48	100	0	198	29	17	22	31	1.96
121828--121878	25	2.0	25	100	0	102	19	11	23	45	1.83
130734--130778	17	2.6	18	83	16	60	0	40	0	60	0.97
139986--140013	2	14.0	2	100	0	56	50	0	0	50	1.00
143933--143972	20	2.0	20	100	0	80	20	10	25	45	1.81
153110--153144	11	3.2	11	83	0	52	77	17	5	0	0.96
154937--155052	32	3.6	32	90	0	187	15	43	27	13	1.85
155121--155215	33	2.9	33	87	0	118	11	32	43	12	1.79
155122--155238	33	3.5	31	81	13	110	11	34	41	11	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155306--155423	32	3.7	32	89	2	166	11	42	36	9	1.74
155707--155777	32	2.2	32	100	0	142	30	11	23	33	1.90

Tables:   1

The End!