Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010409.1 Corchorus capsularis cultivar CVL-1 contig10430, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111665

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6151--6200
25
2.0
26
88
4
75
24
4
18
54
1.61
17711--17750
18
2.3
18
91
4
64
42
0
0
57
0.98
17792--17821
15
1.9
16
93
6
53
66
6
0
26
1.16
18276--18306
2
15.5
2
100
0
62
48
0
0
51
1.00
20077--20166
45
2.0
45
97
0
171
25
8
18
46
1.78
25289--25391
32
3.2
31
84
10
120
33
37
20
8
1.83
25289--25380
48
1.9
48
90
0
148
31
39
20
8
1.83
25289--25380
16
5.8
16
81
7
107
31
39
20
8
1.83
25289--25391
16
6.4
16
80
6
95
33
37
20
8
1.83
25290--25391
48
2.1
48
87
3
143
33
38
19
8
1.83
27595--27641
11
4.3
11
83
5
60
40
4
8
46
1.54
27595--27641
22
2.1
22
92
0
76
40
4
8
46
1.54
28595--28621
12
2.2
12
100
0
54
25
7
0
66
1.17
32471--32508
16
2.5
16
87
8
53
7
15
42
34
1.76
32504--32542
17
2.3
17
95
0
69
0
17
35
46
1.49
33478--33539
28
2.1
28
88
5
88
35
14
0
50
1.43
33914--33986
30
2.4
30
100
0
146
8
10
41
39
1.70
33914--33987
15
4.9
15
76
0
76
9
10
40
39
1.73
50340--50403
24
2.6
25
92
4
105
53
14
0
32
1.41
62179--62222
22
2.0
22
90
0
70
40
9
4
45
1.56
62237--62975
22
33.8
22
68
10
226
36
15
10
38
1.81
67975--68006
3
10.7
3
100
0
64
31
0
0
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92485--92534
17
2.9
17
80
8
57
20
18
22
40
1.92
94043--94067
12
2.1
12
100
0
50
56
16
0
28
1.41

Tables:   1

The End!