Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010433.1 Corchorus capsularis cultivar CVL-1 contig10454, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16443

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1207--1642
167
2.6
165
85
4
579
39
15
15
29
1.88
2229--2294
31
2.1
31
86
5
89
27
19
6
46
1.73
2387--2822
239
1.8
240
86
4
601
34
17
17
30
1.94
3130--3191
27
2.3
27
81
10
65
46
4
3
45
1.40
4097--4134
19
2.0
20
85
15
53
28
5
2
63
1.30
4293--4400
45
2.4
43
83
8
128
35
10
17
37
1.84
4290--4400
22
5.0
22
78
9
111
34
9
18
37
1.84
4490--4629
22
6.4
21
74
13
97
35
7
19
37
1.79
4490--4629
44
3.2
42
78
8
129
35
7
19
37
1.79
4652--4820
22
7.7
22
72
17
120
40
9
13
36
1.77
5134--5363
22
10.3
23
71
10
97
35
9
16
39
1.81
5134--5228
45
2.1
45
83
9
115
36
8
15
38
1.78
5374--5416
22
2.0
22
86
4
61
46
11
16
25
1.80
5375--5428
22
2.5
21
82
8
56
51
7
14
25
1.68
14875--14941
31
2.1
32
81
8
75
28
14
16
40
1.88
16175--16309
31
4.4
31
77
10
161
37
18
18
25
1.94
16115--16274
60
2.7
60
92
1
259
36
18
18
26
1.94
16337--16440
31
3.4
31
72
15
117
23
19
23
34
1.96

Tables:   1

The End!