Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010470.1 Corchorus capsularis cultivar CVL-1 contig10491, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35630

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3957--3998
14
2.9
14
85
3
57
33
11
11
42
1.78
9024--9126
54
1.9
54
95
0
188
30
21
13
34
1.92
10413--10508
35
2.7
35
90
4
149
34
15
23
26
1.95
11616--11658
18
2.4
17
81
14
50
16
2
34
46
1.60
14261--14299
17
2.5
15
84
15
60
10
33
0
56
1.33
14267--14318
17
3.1
17
91
5
79
11
30
3
53
1.54
18335--18405
26
2.7
26
82
6
90
19
15
25
39
1.91
22206--22247
21
1.9
23
85
9
61
54
7
14
23
1.64
23467--23506
19
2.1
19
86
9
55
2
25
2
70
1.13
26863--26979
48
2.4
49
87
5
157
36
11
13
38
1.81
27556--27614
27
2.2
27
90
0
91
35
11
20
32
1.89
27636--27679
16
2.8
16
82
10
54
75
2
20
2
1.03
27636--27696
17
3.6
17
77
20
58
75
3
19
1
1.03
30919--31167
38
6.6
38
76
5
247
30
19
20
30
1.97
30873--31054
74
2.5
74
90
0
283
30
19
19
30
1.97
30891--31137
74
3.3
73
85
3
280
29
20
19
31
1.97
30919--31173
112
2.3
112
88
2
377
29
19
20
30
1.97
31204--31261
15
3.6
15
82
17
80
34
22
0
43
1.54
31195--31280
34
2.5
34
92
0
145
33
25
1
39
1.64
31217--31280
19
3.6
19
79
16
82
34
26
1
37
1.66
31386--31460
25
3.0
25
90
0
114
26
16
17
40
1.90
35076--35111
15
2.4
15
90
0
54
63
5
8
22
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35129--35165
6
6.3
6
90
3
58
48
13
0
37
1.43

Tables:   1

The End!