Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010502.1 Corchorus capsularis cultivar CVL-1 contig10523, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71295

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
282--413
31
4.3
31
77
11
146
38
17
18
25
1.92
253--353
29
3.4
29
70
15
89
35
19
17
26
1.95
222--383
60
2.7
60
88
1
236
36
18
17
27
1.94
441--619
62
3.0
60
79
4
200
26
19
18
35
1.95
18544--18580
19
1.9
19
88
0
56
45
21
0
32
1.52
22754--22783
1
30.0
1
100
0
60
100
0
0
0
0.00
23818--23860
21
2.0
22
86
4
61
18
37
9
34
1.83
25918--25952
16
2.2
16
89
0
52
57
5
25
11
1.56
34371--34659
141
2.1
141
97
0
553
22
18
17
41
1.90
36482--36528
22
2.1
22
100
0
94
38
0
4
57
1.18
43359--43383
12
2.1
12
100
0
50
0
8
0
92
0.40
44921--44945
6
4.2
6
100
0
50
32
0
32
36
1.58
47219--47244
2
13.0
2
100
0
52
50
0
0
50
1.00
52505--52591
33
2.6
34
80
7
90
13
37
37
10
1.79
65266--65325
4
15.0
4
92
0
66
40
0
10
50
1.36
65266--65325
10
6.0
10
88
0
66
40
0
10
50
1.36
65266--65325
14
4.3
14
93
0
66
40
0
10
50
1.36
65279--65334
14
4.0
14
92
0
85
33
0
16
50
1.45
65295--65334
4
11.0
4
80
20
52
27
0
22
50
1.50
65978--66151
22
7.9
21
80
6
159
31
16
12
39
1.86
65977--66174
44
4.5
42
78
11
184
30
16
12
40
1.86
65980--66180
22
9.2
21
79
12
151
29
15
12
41
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65980--66151
66
2.6
66
83
8
190
31
15
12
40
1.85
67072--68484
334
4.2
333
83
5
1548
35
15
15
33
1.89
68197--68773
290
2.0
289
86
5
819
36
15
14
32
1.89
68487--71295
332
8.4
330
86
4
3630
34
15
15
33
1.90

Tables:   1

The End!