Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010609.1 Corchorus capsularis cultivar CVL-1 contig10630, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71990

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--48
2
24.0
2
100
0
96
50
0
0
50
1.00
4605--4769
83
2.0
86
89
3
255
40
17
16
26
1.90
5026--5052
14
1.9
14
100
0
54
0
92
7
0
0.38
7275--7336
32
1.9
32
93
0
106
41
29
14
14
1.85
12298--12327
7
4.3
7
100
0
60
43
30
0
26
1.55
16104--16159
28
2.0
28
89
0
85
42
19
10
26
1.84
16282--16340
20
3.0
20
77
22
72
27
22
13
37
1.91
16332--16357
10
2.6
10
100
0
52
38
23
7
30
1.83
16690--16728
3
13.3
3
94
5
71
30
0
35
33
1.58
17804--17846
12
3.5
12
93
6
77
25
23
16
34
1.95
17915--18345
220
2.0
219
92
1
711
34
13
18
34
1.89
18435--19224
438
1.8
438
83
4
1047
30
13
14
41
1.84
23429--23461
2
16.0
2
93
6
57
48
0
3
48
1.17
23562--23745
41
4.4
41
73
11
142
20
8
29
41
1.82
23547--23745
82
2.4
82
85
3
258
19
10
29
41
1.83
43160--43641
35
13.8
35
81
7
509
32
19
8
39
1.82
43160--43644
108
4.6
106
83
7
546
32
19
8
39
1.82
44131--44238
49
2.1
52
83
6
132
37
14
3
44
1.63
44141--44245
53
2.1
49
87
7
147
40
12
3
42
1.60
46764--46849
37
2.4
36
76
7
93
38
27
15
18
1.91
46861--46954
36
2.6
35
86
3
116
38
32
11
17
1.86
46969--47010
8
5.2
8
77
11
50
47
2
21
28
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46958--47007
24
2.0
26
92
7
86
44
4
20
32
1.70
47226--47284
29
2.0
29
83
0
73
30
22
25
22
1.99
47329--47424
34
2.8
34
81
10
115
34
19
22
22
1.97
48381--48417
18
1.9
18
89
10
56
0
18
0
81
0.70
48690--48724
17
2.0
17
88
5
52
8
20
0
71
1.11
48721--48774
6
8.7
6
85
6
72
16
14
0
68
1.21
48721--48775
19
2.9
19
89
5
85
16
14
0
69
1.20
48722--48770
25
2.0
25
91
0
80
18
16
0
65
1.28
49112--49145
16
2.2
15
89
5
50
29
5
8
55
1.54
49480--49504
2
12.5
2
100
0
50
52
0
0
48
1.00
53749--53775
14
1.9
14
100
0
54
29
29
0
40
1.57
53760--54281
35
14.9
35
81
8
530
31
20
8
39
1.83
53760--54277
144
3.7
138
80
8
514
31
20
8
39
1.83
62322--62348
6
4.5
6
100
0
54
55
14
0
29
1.40
68944--69028
39
2.2
39
82
4
100
55
4
9
30
1.52

Tables:   1

The End!