Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010612.1 Corchorus capsularis cultivar CVL-1 contig10633, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88398

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
294--407
56
2.0
56
100
0
228
42
8
14
35
1.76
20005--20033
13
2.2
13
100
0
58
62
6
6
24
1.45
20018--20066
21
2.3
21
92
0
80
59
4
16
20
1.53
25989--26014
11
2.4
11
100
0
52
92
0
0
7
0.39
26178--26220
12
3.5
12
90
6
68
27
23
13
34
1.93
26258--26296
12
3.6
12
80
19
50
25
28
15
30
1.96
26407--26432
10
2.6
10
100
0
52
38
23
7
30
1.83
31585--31614
2
15.0
2
100
0
60
0
50
0
50
1.00
34734--34841
32
3.4
32
65
25
84
37
14
12
34
1.85
39241--39269
2
14.5
2
100
0
58
48
0
0
51
1.00
41991--42074
2
42.0
2
100
0
168
0
0
50
50
1.00
50888--50928
20
2.0
20
95
0
73
29
0
21
48
1.50
60956--61502
22
24.6
22
67
12
169
34
15
10
39
1.81
61043--61483
66
6.6
65
69
13
209
35
15
10
38
1.82
61593--61667
22
3.4
22
79
3
62
36
10
6
46
1.65
61615--61779
22
7.3
23
72
7
63
35
13
9
41
1.77
61678--61779
22
4.5
22
77
6
89
36
13
9
40
1.78
61635--61898
22
11.8
22
65
21
70
34
15
9
40
1.79
61548--62209
332
2.0
332
99
0
1306
34
15
9
40
1.79
61947--62071
22
5.7
22
73
12
87
33
14
9
42
1.78
62010--62111
22
4.5
23
77
6
93
36
13
9
40
1.78
61947--62210
22
11.8
22
66
19
68
33
14
9
41
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62178--62294
22
5.4
22
70
12
80
34
19
8
37
1.82
62331--62379
22
2.2
22
89
7
73
46
26
4
22
1.69
62385--62504
44
2.7
44
87
5
154
35
14
14
36
1.86
62365--62535
22
7.7
23
73
10
108
35
15
13
35
1.86
62343--62512
66
2.5
66
79
7
166
38
15
11
33
1.84
62702--62739
19
2.0
20
85
15
53
63
2
5
28
1.30
62811--62881
25
2.8
25
74
10
72
49
1
4
45
1.30
62752--63077
167
1.9
174
82
7
418
44
8
10
35
1.70
63407--63474
30
2.2
31
92
2
111
47
4
19
29
1.69
67765--67879
58
2.0
58
94
1
205
16
34
1
46
1.57
69218--69259
15
2.8
15
96
0
75
52
7
23
16
1.68
69336--69368
15
2.2
15
94
0
57
51
3
21
24
1.62
69233--69440
111
1.9
111
89
0
326
44
16
18
20
1.87
69748--69790
18
2.4
18
81
14
61
41
11
0
46
1.40
77238--77286
22
2.2
23
85
3
64
36
18
16
28
1.92
81191--81260
30
2.3
30
80
4
79
55
7
18
18
1.64
86096--86134
2
20.0
2
89
5
62
48
2
0
48
1.15

Tables:   1

The End!