Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010619.1 Corchorus capsularis cultivar CVL-1 contig10640, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10966

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
771--799
5
5.8
5
100
0
58
0
0
17
82
0.66
2410--2449
19
2.0
20
95
4
73
67
0
5
27
1.11
2413--2458
19
2.4
19
88
0
65
63
2
2
32
1.19
2509--2630
39
3.1
39
63
21
101
47
0
17
34
1.53
2511--2632
38
3.2
38
62
25
92
47
0
17
34
1.53
2491--2702
78
2.7
78
91
2
327
49
1
13
35
1.51
2790--2821
6
5.5
6
92
7
57
50
0
15
34
1.45
3327--3383
28
2.0
28
93
0
96
50
12
8
28
1.69
3752--3784
17
1.9
17
88
11
50
51
6
0
42
1.26
4061--4098
19
2.0
19
100
0
76
47
15
10
26
1.78
4217--4263
22
2.1
23
88
4
69
57
8
2
31
1.41
4228--4277
22
2.3
22
82
6
57
60
6
2
32
1.32
4241--4279
15
2.6
15
83
0
51
56
5
2
35
1.35
4515--4557
20
2.1
21
91
4
70
34
9
37
18
1.83
7899--7970
32
2.2
32
97
0
135
13
41
36
8
1.75
7919--8048
33
4.0
33
88
6
149
11
33
41
13
1.81
8686--10260
439
3.6
436
83
5
1712
29
13
14
42
1.84
10889--10964
32
2.3
33
84
6
93
7
38
40
13
1.73

Tables:   1

The End!