Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010713.1 Corchorus capsularis cultivar CVL-1 contig10734, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80721

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
315--380
30
2.2
30
86
5
89
22
37
30
9
1.85
8521--8751
36
6.9
31
74
15
185
40
9
18
31
1.82
8526--8755
67
3.4
65
79
7
203
40
9
18
31
1.82
8526--8786
35
7.7
34
76
12
214
39
9
19
32
1.84
11804--11855
14
3.9
12
76
18
50
40
7
17
34
1.78
12561--12602
16
2.6
16
81
7
50
78
0
21
0
0.75
14397--14559
71
2.3
71
87
2
220
16
15
30
37
1.90
14467--14671
107
1.9
107
85
2
286
18
12
28
41
1.86
14574--14747
71
2.5
70
79
7
199
17
12
28
40
1.87
14388--14852
178
2.6
178
81
2
531
17
14
28
39
1.89
14624--14885
107
2.4
107
82
2
294
17
14
28
38
1.90
14467--14888
36
11.8
36
68
6
187
18
13
28
40
1.88
18033--18062
14
2.1
15
93
6
53
90
0
6
3
0.56
18033--18062
15
2.0
15
93
0
51
90
0
6
3
0.56
18426--19307
31
26.8
31
78
12
788
40
8
19
32
1.80
18424--19250
96
8.4
96
88
4
1152
40
7
19
32
1.80
19014--19176
35
4.5
37
80
10
153
38
7
18
36
1.79
18948--19341
65
5.7
70
76
12
306
39
8
18
34
1.81
21280--21867
31
17.4
34
77
14
526
40
8
18
32
1.81
21295--21867
96
5.7
96
79
12
555
40
8
18
32
1.81
21526--21730
35
5.8
39
73
20
132
39
7
19
34
1.79
21418--21869
65
6.5
72
74
16
374
40
8
18
32
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21846--21984
56
2.5
56
82
8
160
41
6
23
28
1.79
21879--21984
56
1.9
56
90
3
169
42
5
23
28
1.77
27042--27117
27
2.8
27
86
11
102
14
11
27
46
1.80
27042--27117
28
2.8
28
88
9
104
14
11
27
46
1.80
27367--27398
16
2.0
16
100
0
64
37
12
6
43
1.68
30560--30601
21
1.9
21
85
9
57
76
2
19
2
1.01
31576--31872
69
4.4
67
84
5
334
42
17
18
21
1.89
39257--39291
11
3.3
10
85
14
52
51
17
2
28
1.59
43725--43768
22
2.0
22
95
0
79
38
9
9
43
1.68
49210--49238
9
3.2
9
100
0
58
10
20
48
20
1.79
52636--52664
12
2.3
13
94
5
51
86
0
0
13
0.58
53377--53462
6
14.8
6
90
4
106
53
0
8
38
1.31
53969--53994
12
2.2
12
100
0
52
34
30
15
19
1.93
54270--54300
15
2.1
15
93
0
53
70
0
3
25
1.02
54813--54898
41
2.1
41
95
2
156
45
13
11
29
1.79
58483--58517
18
1.9
18
88
0
52
25
22
5
45
1.74
61906--61937
6
5.5
6
96
3
57
31
0
12
56
1.37
65481--65520
21
1.9
21
84
0
53
15
45
25
15
1.84
70782--70813
2
16.5
2
93
6
57
53
0
0
46
1.00
73081--73108
3
9.3
3
100
0
56
35
0
0
64
0.94

Tables:   1

The End!