Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011030.1 Corchorus capsularis cultivar CVL-1 contig11051, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94514

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
789--957
84
2.0
84
87
4
243
37
15
17
28
1.91
1112--1171
29
2.0
30
90
3
95
38
26
28
6
1.81
33875--33913
19
2.1
19
85
9
53
17
12
5
64
1.46
37270--37342
31
2.4
31
85
0
92
13
23
23
39
1.90
38756--38790
2
17.5
2
100
0
70
51
0
0
48
1.00
52549--52621
36
2.0
37
97
2
139
27
24
23
24
2.00
68708--68748
22
1.9
21
85
5
55
19
4
0
75
0.98
71564--71592
11
2.7
11
94
5
51
55
0
0
44
0.99
72948--73021
38
2.0
37
87
12
109
48
13
13
24
1.78
73286--73342
28
2.1
27
83
9
71
36
5
10
47
1.61
77580--77612
3
11.0
3
100
0
66
33
0
0
66
0.92
81364--81471
31
3.5
31
85
0
162
36
23
22
18
1.95
83150--83320
22
7.7
22
70
17
97
40
8
14
36
1.75
83371--83422
22
2.3
23
83
9
63
42
9
9
38
1.70
83412--83475
22
2.9
21
77
9
65
37
14
17
31
1.89
83503--83559
21
2.4
24
78
18
66
45
7
12
35
1.69
83505--83557
25
2.3
21
87
12
70
45
5
13
35
1.67
83546--83639
22
4.2
23
79
4
95
38
10
17
34
1.84
83683--83787
22
4.7
23
73
12
78
40
10
12
37
1.77
90231--90288
28
2.1
28
100
0
116
44
18
13
22
1.85
90578--92873
329
7.0
330
78
6
2240
35
15
15
33
1.89
92741--93004
132
2.0
132
86
1
368
33
15
21
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92413--93330
456
2.0
457
90
3
1466
34
15
17
32
1.92
92873--94275
324
4.3
319
78
8
1270
34
14
16
33
1.89
94173--94437
132
2.0
132
86
1
370
33
15
21
28
1.95

Tables:   1

The End!