Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011033.1 Corchorus capsularis cultivar CVL-1 contig11054, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54088

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4437--5585
330
3.5
330
77
10
1052
35
15
14
34
1.88
6273--6904
333
1.9
333
85
2
876
35
18
13
32
1.90
6936--8255
328
4.0
334
80
4
1359
35
16
13
34
1.88
6981--8248
659
1.9
664
81
4
1526
35
15
13
34
1.87
12218--12512
109
2.7
109
90
5
441
49
1
11
37
1.49
15963--16107
73
2.0
72
98
1
281
26
17
22
33
1.96
18187--18220
15
2.3
15
90
10
52
61
5
5
26
1.42
18249--18298
25
2.0
25
100
0
100
28
20
24
28
1.99
18673--18718
23
2.0
24
86
4
67
60
10
2
26
1.41
21141--23824
668
4.1
660
80
6
2732
35
16
14
33
1.89
21137--23824
329
8.2
328
77
7
2417
35
16
14
33
1.89
21137--23824
998
2.7
977
80
8
2734
35
16
14
33
1.89
26551--26716
78
2.1
80
87
5
239
35
19
25
19
1.95
27616--32305
332
14.3
330
75
9
3238
36
15
13
33
1.88
27616--32246
990
4.7
980
77
8
3844
36
15
13
33
1.88
32413--32446
2
17.5
2
93
6
61
47
0
0
52
1.00
33445--33495
21
2.4
21
90
6
77
29
17
23
29
1.97
33512--33568
30
1.9
30
85
7
80
28
21
17
33
1.96
38260--38310
21
2.4
21
96
0
93
29
19
25
25
1.99
41032--41149
58
2.0
59
90
1
184
44
11
9
34
1.72
48488--51175
321
8.3
322
88
1
3827
33
15
16
34
1.91
51818--51842
10
2.5
10
100
0
50
48
20
8
24
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52752--52786
13
2.7
13
86
0
52
22
5
8
62
1.45
52969--54088
323
3.5
323
89
1
1690
34
14
16
34
1.89

Tables:   1

The End!