Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011050.1 Corchorus capsularis cultivar CVL-1 contig11071, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48565

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1112--3216
329
6.5
319
79
8
2059
36
16
15
32
1.90
1112--3211
658
3.2
647
79
9
2448
36
16
15
32
1.90
2725--3772
559
1.9
557
83
6
1244
34
17
15
32
1.92
3256--4416
332
3.5
330
84
4
1354
36
16
14
31
1.90
3908--5244
733
1.8
732
87
4
2003
37
15
14
32
1.88
4535--7951
331
10.5
323
76
9
2749
36
16
14
33
1.88
4642--7946
983
3.4
963
75
10
2785
36
15
14
32
1.88
7948--16086
323
25.2
321
77
9
6521
36
16
13
32
1.88
7948--15986
657
12.4
632
75
10
6026
36
16
13
32
1.88
14066--14093
2
14.0
2
100
0
56
50
0
0
50
1.00
14556--14597
17
2.4
17
96
4
75
57
14
0
28
1.38
33756--33804
25
2.0
24
84
4
62
46
10
10
32
1.71
33871--33947
40
2.0
40
94
5
140
48
7
0
44
1.32
34137--34165
13
2.2
13
100
0
58
34
20
13
31
1.92
34257--34288
12
2.5
13
95
5
57
62
0
6
31
1.20
34150--34595
154
2.8
161
84
7
584
40
13
13
33
1.83
34505--34738
116
2.0
117
87
2
337
36
14
10
37
1.82
34351--34865
270
1.9
270
90
0
816
39
13
12
35
1.82
34621--34946
154
2.1
154
88
1
474
38
14
12
34
1.84
42715--42799
41
2.0
41
90
4
134
47
8
8
36
1.64
44696--44722
3
9.0
3
100
0
54
33
0
0
66
0.92

Tables:   1

The End!