Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011085.1 Corchorus capsularis cultivar CVL-1 contig11106, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20874

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2988--3018
12
2.6
12
94
0
53
61
9
12
16
1.56
10396--10437
21
2.0
21
85
0
57
21
35
4
38
1.75
10538--10588
24
2.3
22
83
12
68
41
27
17
13
1.87
10545--10605
24
2.5
24
92
5
97
36
24
21
18
1.95
11155--11394
123
2.0
123
89
1
374
44
20
7
27
1.79
11463--11504
21
2.0
21
100
0
84
42
33
9
14
1.78
14220--14293
31
2.4
30
75
2
76
17
27
20
35
1.95
15460--16203
379
2.0
371
86
6
1054
31
13
15
38
1.87
16217--16246
3
10.0
3
100
0
60
33
0
0
66
0.92
18705--20333
333
4.9
328
80
7
1655
33
14
16
36
1.89
20113--20874
248
3.1
246
85
2
992
32
13
15
38
1.87

Tables:   1

The End!