Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011107.1 Corchorus capsularis cultivar CVL-1 contig11128, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58774

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19--104
32
2.7
32
89
3
120
9
43
38
9
1.69
14156--14185
15
2.0
15
100
0
60
6
13
20
60
1.55
14692--14721
1
30.0
1
100
0
60
0
0
0
100
0.00
21329--21359
2
15.5
2
93
0
53
48
48
3
0
1.17
33211--33250
20
2.0
20
90
0
62
27
12
17
42
1.85
33763--33827
28
2.3
28
97
0
121
13
7
33
44
1.73
34422--34446
7
3.6
7
100
0
50
44
0
0
56
0.99
35056--35220
81
2.0
81
98
0
321
31
20
36
11
1.88
37597--37636
9
4.6
9
84
6
55
72
2
25
0
0.97
39150--45422
331
19.1
330
75
10
4803
36
16
14
33
1.89
45269--45588
177
1.8
177
88
2
500
36
14
13
35
1.86
50015--50046
2
16.0
2
100
0
64
50
0
0
50
1.00
55415--55656
80
3.0
80
97
0
457
44
13
8
33
1.75
57358--58727
651
2.1
647
80
6
1538
34
14
15
35
1.88

Tables:   1

The End!