genome.fa.s11110.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011110.1 Corchorus capsularis cultivar CVL-1 contig11131, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152610

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255--310	29	1.9	29	100	0	112	28	23	17	30	1.97
421--485	31	2.1	31	100	0	130	41	23	15	20	1.89
3705--3778	31	2.4	31	95	0	130	20	21	21	36	1.95
8208--8355	74	2.0	74	97	0	278	33	39	5	21	1.76
8477--8502	5	5.2	5	100	0	52	19	80	0	0	0.71
9437--9469	17	1.9	17	93	0	57	63	0	18	18	1.31
14721--14746	1	26.0	1	100	0	52	0	0	0	100	0.00
17236--17273	20	1.9	20	94	0	67	44	13	7	34	1.72
28100--28288	90	2.1	90	92	2	308	26	13	16	43	1.85
29675--29755	40	2.1	39	92	2	135	32	19	18	29	1.96
32512--32536	11	2.3	11	100	0	50	24	8	0	68	1.16
38001--38043	21	2.0	21	95	0	77	23	23	25	27	2.00
44679--44772	31	3.0	31	85	0	116	20	22	24	32	1.97
48841--48886	24	1.9	24	90	0	74	21	23	13	41	1.88
74452--74558	50	2.1	50	94	0	187	30	26	15	27	1.96
77666--77738	30	2.4	31	83	2	85	32	17	12	36	1.87
87218--87264	22	2.1	22	96	0	85	38	6	12	42	1.69
89253--89280	2	14.0	2	100	0	56	50	0	0	50	1.00
94775--94822	22	2.3	20	86	10	62	39	25	16	18	1.91
94742--94844	53	1.9	53	90	0	161	35	27	19	17	1.94
96829--96855	13	2.1	13	100	0	54	25	29	7	37	1.83
106289--106321	15	2.2	15	100	0	66	27	12	6	54	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106413--106472	29	2.1	29	90	0	93	50	5	16	28	1.66
115399--115423	1	25.0	1	100	0	50	100	0	0	0	0.00
121743--121782	2	21.0	2	85	10	57	50	2	0	47	1.14
136944--136974	2	15.5	2	100	0	62	51	0	0	48	1.00
143115--143190	29	2.6	29	79	6	73	21	22	13	43	1.86
143309--143383	29	2.6	29	84	2	96	46	16	16	21	1.83
149818--149842	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1

The End!