genome.fa.s11141.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011141.1 Corchorus capsularis cultivar CVL-1 contig11162, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38601

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77--148	32	2.3	32	92	4	121	25	12	22	40	1.89
2758--2816	31	1.9	30	89	6	91	35	25	22	16	1.95
2800--2847	22	2.3	20	86	10	62	39	25	16	18	1.91
2767--2869	53	1.9	53	90	0	161	36	27	19	16	1.93
2819--2908	31	2.9	31	83	0	108	34	26	20	18	1.96
3484--3568	22	3.9	22	92	0	134	35	14	16	34	1.89
3438--3622	22	8.3	22	78	8	124	33	9	18	37	1.84
3661--3793	22	6.0	22	71	11	83	35	9	19	35	1.85
3676--4045	22	16.8	22	68	18	100	40	9	15	34	1.79
3822--3987	66	2.5	63	79	12	149	43	7	13	34	1.73
3838--4070	44	5.4	44	73	10	178	43	9	12	34	1.74
4151--4217	19	3.5	19	85	2	89	43	11	20	23	1.85
4208--4745	22	24.7	22	68	13	157	39	9	14	36	1.78
4208--4662	44	10.4	42	71	13	201	38	9	14	37	1.79
4377--4461	23	3.7	23	84	1	109	37	7	15	40	1.74
4530--4615	45	1.9	45	83	4	111	34	11	15	38	1.83
5865--5954	45	2.0	45	93	0	153	26	23	15	34	1.95
6835--6889	6	9.2	6	82	7	58	43	0	0	56	0.99
8423--8454	14	2.3	14	94	0	55	37	9	18	34	1.83
8542--8573	14	2.3	14	94	0	55	28	15	6	50	1.68
11142--11172	16	1.9	16	93	0	53	32	6	12	48	1.67
11137--11194	23	2.5	22	81	10	62	27	6	17	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11151--11195	23	2.0	23	90	0	72	26	4	17	51	1.65
11217--11250	8	4.4	8	88	3	52	35	8	11	44	1.72
11470--11538	33	2.1	33	100	0	138	13	14	14	57	1.65
13827--13882	1	56.0	1	96	0	103	98	0	1	0	0.13
15386--15460	29	2.6	29	86	2	105	22	29	13	34	1.92
15602--15704	30	3.5	30	81	13	99	43	16	19	20	1.88
15636--15704	29	2.4	27	81	15	77	46	15	15	21	1.84
23240--23407	22	7.6	23	74	12	129	41	10	14	33	1.79
23301--23404	45	2.4	45	82	8	124	42	9	12	35	1.76
23419--23465	21	2.2	20	85	7	67	40	6	12	40	1.69
23223--23467	22	11.3	21	71	16	121	41	10	14	33	1.80
23345--23465	42	2.8	42	71	10	102	40	9	14	34	1.80
23615--23710	44	2.2	43	78	10	106	43	7	17	31	1.76
23739--23802	25	2.6	25	87	4	87	40	4	12	42	1.64
23724--23802	25	3.4	23	76	8	70	41	5	12	40	1.65
23764--23843	22	3.6	22	79	5	81	38	10	12	38	1.77
23808--23854	22	2.1	22	92	0	76	34	10	14	40	1.81
23808--23863	22	2.5	23	83	13	73	35	12	12	39	1.81
23893--23978	45	1.9	45	83	4	111	36	11	13	38	1.82
24004--24042	19	2.1	19	85	9	53	51	7	10	30	1.64

Tables:   1

The End!