Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011231.1 Corchorus capsularis cultivar CVL-1 contig11252, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95542

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--140
36
3.9
36
85
3
163
41
10
22
25
1.85
142--243
37
3.0
33
85
9
118
50
6
14
28
1.69
11783--11866
42
2.0
42
97
0
159
29
21
34
14
1.93
13241--13737
35
13.9
35
69
12
251
38
7
15
38
1.75
13331--13483
21
8.0
21
65
19
82
42
4
15
37
1.67
13297--13684
56
7.1
56
88
5
598
39
6
15
38
1.73
13241--13461
91
2.4
87
77
11
246
38
7
16
37
1.77
13444--13491
21
2.3
21
85
0
60
47
4
10
37
1.57
13468--13675
47
4.1
47
73
19
200
39
6
15
38
1.74
13516--13679
55
2.9
56
89
1
267
40
6
14
38
1.73
13602--13641
21
1.9
21
89
0
62
47
0
12
40
1.41
13602--13649
21
2.3
21
85
0
60
47
4
10
37
1.57
13648--13739
19
5.2
19
70
19
90
38
6
17
38
1.76
13604--13684
21
4.2
21
65
20
59
41
4
13
39
1.66
19356--19435
27
2.9
27
81
3
97
18
18
21
41
1.91
19360--19437
28
2.9
26
81
9
93
19
16
21
42
1.89
21373--21420
16
2.7
19
70
26
50
56
10
29
4
1.52
26918--26976
19
3.2
19
79
13
52
35
18
11
33
1.88
28729--28761
16
2.1
16
94
0
57
33
6
15
45
1.70
36164--36198
11
3.2
11
83
0
52
77
17
5
0
0.96
38087--38133
17
2.8
17
80
6
51
0
21
2
76
0.89
40602--40649
15
3.2
15
81
0
60
39
20
22
16
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56065--56091
2
13.5
2
100
0
54
51
0
0
48
1.00
59496--59540
23
2.0
22
87
8
65
11
31
13
44
1.78
61123--61159
19
2.0
18
89
5
56
40
8
21
29
1.82
63481--63541
28
2.2
28
90
0
95
29
26
27
16
1.97
70051--70139
39
2.3
39
86
0
124
31
23
22
22
1.98
71387--71548
85
1.9
86
87
5
236
26
7
22
43
1.80
74909--75467
277
2.0
278
93
1
969
33
22
12
31
1.92
80637--80700
31
2.1
31
93
0
110
37
12
14
35
1.83

Tables:   1

The End!