Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011241.1 Corchorus capsularis cultivar CVL-1 contig11262, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39330

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--34
2
17.0
2
100
0
68
50
0
0
50
1.00
2062--2089
6
4.7
6
100
0
56
14
0
0
85
0.59
2390--2470
40
2.1
39
90
6
128
40
16
14
28
1.88
8734--8771
20
2.0
18
90
10
58
10
5
5
78
1.06
9377--9435
29
2.0
29
83
3
73
33
25
10
30
1.89
10147--10278
69
1.9
69
84
3
176
24
15
14
46
1.83
13636--13691
3
18.7
3
100
0
112
32
0
0
67
0.91
15477--15507
7
4.6
7
96
4
55
22
0
12
64
1.27
19241--19408
38
4.5
38
80
10
184
51
6
16
26
1.68
19241--19408
75
2.2
75
82
6
189
51
6
16
26
1.68
19439--19477
21
1.9
20
89
5
60
41
0
17
41
1.50
19444--19489
21
2.2
21
84
0
56
41
6
15
36
1.73
19441--19908
56
8.4
56
87
4
666
37
6
18
37
1.76
19553--19589
16
2.2
17
90
4
58
45
0
13
40
1.43
19604--19694
29
3.2
29
63
12
80
41
4
17
36
1.70
19441--19908
111
4.2
112
87
6
668
37
6
18
37
1.76
19775--19819
21
2.2
20
84
4
54
42
4
15
37
1.67
19829--19869
21
2.0
21
95
0
73
41
0
17
41
1.49
19850--19966
35
3.3
35
74
11
128
38
7
17
36
1.78
19828--19995
73
2.3
73
88
4
257
41
6
15
36
1.73
19899--19943
21
2.1
21
91
0
72
42
2
15
40
1.59
19918--20019
52
2.0
52
88
3
152
41
8
13
36
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19988--20090
35
2.9
35
89
0
161
38
6
16
37
1.75
20007--20063
16
3.4
16
68
13
51
43
3
14
38
1.62
19901--20041
52
2.6
52
76
14
144
40
7
14
37
1.75
19998--20103
35
3.1
34
88
5
137
38
5
16
38
1.73
24070--24095
2
13.0
2
100
0
52
50
0
0
50
1.00
24447--24482
15
2.5
14
86
4
54
16
0
2
80
0.83
24720--24766
19
2.6
18
83
9
60
46
2
6
44
1.40
26560--26604
9
4.6
10
82
17
51
28
0
2
68
1.01
26564--26603
3
13.7
3
89
5
64
30
0
2
67
1.04
37309--37365
29
2.0
29
100
0
114
42
21
10
26
1.85
37465--37489
13
1.9
13
100
0
50
88
0
12
0
0.53

Tables:   1

The End!