genome.fa.s11269.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011269.1 Corchorus capsularis cultivar CVL-1 contig11290, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  165027

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12437--12472	18	2.0	18	94	0	63	33	11	19	36	1.87
12533--12575	5	8.4	5	89	5	68	18	0	0	81	0.69
12533--12575	16	2.8	15	89	6	68	18	0	0	81	0.69
21365--21395	10	2.9	11	90	9	55	77	0	0	22	0.77
21473--21520	14	3.7	14	71	28	52	25	0	14	60	1.34
21470--21567	26	4.0	25	87	11	125	30	1	11	57	1.41
21420--21567	15	9.7	15	65	25	53	33	1	10	55	1.42
21576--21635	25	2.5	25	89	5	88	43	0	21	35	1.53
21705--21749	21	2.1	22	83	4	56	40	8	35	15	1.79
21888--21935	22	2.2	21	88	3	69	20	27	8	43	1.80
22456--22523	33	2.1	33	88	5	102	16	39	27	16	1.89
22686--22710	9	2.8	9	100	0	50	56	0	24	20	1.43
24078--24121	21	2.1	21	100	0	88	13	22	29	34	1.93
31907--31988	32	2.6	32	96	0	146	39	25	4	30	1.77
37134--37164	12	2.6	12	89	0	53	48	6	3	41	1.45
37153--37183	16	1.9	16	93	0	53	41	12	3	41	1.59
37131--37167	10	3.5	10	86	13	56	45	10	2	40	1.53
37730--37798	29	2.4	28	74	11	68	36	7	20	36	1.80
37837--37954	58	2.0	58	98	0	227	21	23	17	37	1.94
37935--38040	31	3.5	29	76	6	86	25	16	18	38	1.92
37961--38040	31	2.7	30	76	5	90	27	17	20	35	1.95
50781--50812	15	2.1	15	94	0	55	18	15	3	62	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50972--51018	15	3.1	16	69	12	53	57	8	14	19	1.63
57349--57375	4	6.8	4	100	0	54	22	0	0	77	0.76
58863--58896	6	5.7	6	100	0	68	0	14	0	85	0.60
68795--68839	22	2.0	22	100	0	90	26	8	17	46	1.78
69088--69173	24	3.6	24	93	3	129	17	25	15	41	1.88
72254--72282	14	2.1	14	100	0	58	41	27	6	24	1.80
74699--74745	3	16.0	3	95	4	87	34	0	0	65	0.93
75204--75249	23	2.0	23	95	0	83	13	36	21	28	1.91
75246--75284	21	1.9	20	84	5	51	46	30	2	20	1.64
76115--76160	23	2.0	23	91	0	74	13	34	21	30	1.91
76157--76195	21	1.9	20	84	5	51	46	30	2	20	1.64
75026--77373	911	2.6	911	99	0	4624	35	26	10	27	1.90
77026--77071	23	2.0	23	91	0	74	13	34	21	30	1.91
77068--77106	21	1.9	20	84	5	51	46	30	2	20	1.64
92078--92124	13	3.5	13	72	16	51	68	12	2	17	1.31
92591--92743	75	2.0	75	96	0	279	29	16	26	27	1.97
98357--98389	15	2.3	15	89	5	50	3	12	0	84	0.72
98885--99253	181	2.0	181	98	0	711	23	17	23	35	1.95
102873--102906	11	3.1	11	91	0	59	29	0	17	52	1.45
108033--108075	12	3.3	13	87	6	52	46	23	11	18	1.82
108043--108078	12	2.9	12	91	4	54	50	19	13	16	1.79
108252--108335	41	2.0	41	95	0	150	23	17	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109515--109719	69	3.1	63	72	13	180	37	9	21	31	1.85
115187--115231	25	1.9	25	86	13	69	28	11	13	46	1.77
115543--115593	3	16.3	3	80	8	57	64	5	0	29	1.17
115543--115593	25	2.0	25	88	7	77	64	5	0	29	1.17
115792--115897	31	3.5	31	75	5	126	30	9	16	43	1.80
115767--115906	60	2.3	60	98	0	271	33	10	16	39	1.83
115767--115906	31	4.7	29	70	6	118	33	10	16	39	1.83
118696--118720	2	12.5	2	100	0	50	48	52	0	0	1.00
121269--121390	62	2.0	62	80	9	142	36	10	22	29	1.88
137566--137597	2	16.0	2	100	0	64	50	0	0	50	1.00
140038--140194	31	5.4	31	72	15	102	19	21	26	33	1.97
140085--140187	53	1.9	53	84	0	134	18	18	26	36	1.94
155305--155338	15	2.3	15	89	0	50	76	2	8	11	1.12
155735--156180	167	2.7	166	87	3	635	39	16	15	28	1.89
156711--156796	45	1.9	45	92	4	147	24	19	22	33	1.97
157102--157268	81	2.1	81	90	1	264	29	14	10	44	1.80
157849--157877	13	2.3	13	94	5	51	0	10	0	89	0.48
159489--159513	12	2.1	12	100	0	50	0	32	8	60	1.26
160449--160487	2	20.0	2	94	5	71	51	0	0	48	1.00
163424--163539	59	1.9	61	85	5	164	31	12	15	41	1.84

Tables:   1

The End!