Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011386.1 Corchorus capsularis cultivar CVL-1 contig11407, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30530

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1950--2038
44
2.0
43
91
2
142
26
16
31
24
1.97
2501--2565
28
2.4
28
81
2
78
21
7
24
46
1.77
4072--4179
27
3.9
26
78
7
99
17
32
26
23
1.97
7707--7763
28
2.1
27
90
3
87
40
10
17
31
1.84
9340--9368
13
2.1
14
93
6
51
75
0
6
17
1.01
9345--9393
21
2.4
20
87
12
73
75
2
6
16
1.09
11340--11454
32
3.5
32
87
4
140
28
20
6
43
1.78
11464--12396
41
24.1
40
86
7
958
24
20
8
45
1.79
12386--12800
77
5.5
75
80
10
438
25
16
10
46
1.79
12386--12795
37
10.9
37
80
8
386
26
16
10
46
1.80
12381--12795
114
3.7
114
82
6
461
25
16
10
46
1.80
12760--12909
42
3.6
42
81
5
153
28
16
9
45
1.78
14267--14293
12
2.2
12
100
0
54
18
18
48
14
1.82
16277--16344
26
2.5
28
81
9
88
41
27
19
11
1.86
22181--22228
15
3.2
15
93
0
78
41
29
16
12
1.85

Tables:   1

The End!