genome.fa.s11465.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011465.1 Corchorus capsularis cultivar CVL-1 contig11486, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47509

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6092--6125	8	4.1	8	85	7	50	23	2	14	58	1.50
7079--7125	23	2.0	23	91	0	76	12	29	34	23	1.92
7975--8033	25	2.4	25	91	5	95	35	22	0	42	1.54
8043--8109	25	2.6	26	86	9	93	50	10	1	37	1.46
8185--8229	19	2.4	19	84	0	54	51	0	0	48	1.00
8196--8242	19	2.4	19	92	3	76	44	0	4	51	1.21
8373--8417	20	2.1	22	88	12	76	31	6	44	17	1.75
8374--8417	21	2.1	21	95	4	81	29	6	45	18	1.75
14005--14078	22	3.4	22	79	3	78	45	10	8	35	1.69
14062--14152	43	2.1	43	85	4	121	36	9	12	41	1.76
14090--14152	22	3.0	21	77	11	74	36	9	14	39	1.78
14087--14167	43	1.9	41	90	5	126	38	8	12	40	1.74
14097--14172	21	3.6	20	72	15	55	40	7	10	40	1.69
14092--14188	43	2.3	43	83	5	117	41	11	8	39	1.71
14134--14192	21	2.8	22	82	7	77	44	13	5	37	1.66
14318--14771	22	20.7	22	68	14	136	38	8	14	38	1.76
14654--14706	21	2.5	21	84	9	63	43	5	9	41	1.61
15472--15925	22	20.7	22	68	14	136	38	8	14	38	1.76
15808--15860	21	2.5	21	84	9	63	43	5	9	41	1.61
18058--18121	27	2.3	27	94	2	110	54	7	29	7	1.57
21626--21687	19	3.3	19	68	8	54	54	3	12	29	1.53
21626--21759	40	3.4	37	76	13	126	52	4	14	28	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21767--21895	16	7.4	16	71	15	80	38	4	17	39	1.70
21781--21948	35	4.6	35	67	15	97	38	5	16	39	1.73
21818--21969	21	7.9	21	64	19	80	40	4	15	39	1.67
21783--22232	56	8.1	56	88	2	640	38	7	16	37	1.76
21930--21977	21	2.3	21	85	0	60	45	6	10	37	1.64
21988--22032	21	2.2	20	84	4	54	42	4	15	37	1.67
22174--22339	35	4.7	35	69	8	93	40	10	14	34	1.80
22316--22407	46	1.9	48	80	10	109	44	6	13	35	1.69
26197--26240	3	14.0	3	81	9	52	65	2	4	27	1.23
26197--26240	10	4.6	10	88	2	56	65	2	4	27	1.23
33497--33548	27	1.9	27	100	0	104	40	17	26	15	1.89
34644--34679	18	2.0	18	88	0	54	30	22	11	36	1.89
34813--34945	35	3.8	35	77	4	133	33	16	21	29	1.95
36219--36245	12	2.2	12	100	0	54	48	18	25	7	1.74
38398--38459	19	3.3	19	68	8	54	54	4	11	29	1.56
38555--38722	35	4.6	35	67	15	106	38	5	16	39	1.72
38592--38743	21	7.9	21	65	19	89	40	3	15	39	1.66
38557--39008	56	8.1	56	91	1	694	38	6	17	37	1.76
38762--38846	20	4.5	20	66	19	65	40	4	17	37	1.71
38762--38861	21	5.2	20	68	17	59	40	6	17	37	1.74
38765--38866	55	2.0	48	100	0	141	38	6	18	36	1.78
38559--38996	222	2.0	224	90	1	702	37	6	17	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38950--39027	35	2.2	35	88	0	111	37	8	16	37	1.80
38950--39116	35	4.7	36	71	10	103	40	11	13	34	1.81
42604--42662	30	2.0	30	90	6	93	27	18	33	20	1.96

Tables:   1

The End!