genome.fa.s11511.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011511.1 Corchorus capsularis cultivar CVL-1 contig11532, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17492

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1404--1468	3	22.0	3	78	9	71	66	0	33	0	0.92
2389--3317	35	26.8	35	81	7	927	37	9	17	35	1.83
2389--3317	207	4.5	207	82	6	987	37	9	17	35	1.83
2389--3317	242	3.8	243	85	6	1147	37	9	17	35	1.83
6542--6573	6	5.5	6	96	3	57	56	15	0	28	1.40
9732--9770	3	13.0	3	84	10	53	71	0	0	28	0.86
9732--9782	19	2.7	20	79	14	63	76	1	0	21	0.88
9858--9893	19	1.9	18	88	5	54	58	8	5	27	1.50
10558--10596	21	1.9	20	94	5	69	82	0	17	0	0.68
11578--11643	34	1.9	34	87	0	96	25	24	15	34	1.94
11724--11791	35	1.9	36	82	8	86	20	19	20	39	1.92
11976--12042	35	1.9	35	84	0	89	20	16	22	40	1.91
12199--12433	107	2.2	106	79	6	242	19	18	26	35	1.95
15212--15257	3	15.7	3	78	13	51	65	0	34	0	0.93
16634--16719	36	2.4	35	90	5	136	27	19	8	44	1.79
16634--16734	36	2.9	34	84	9	118	26	21	6	44	1.77
16764--17355	36	16.8	36	84	4	731	25	21	9	42	1.83
16764--17355	107	5.6	105	84	5	599	25	21	9	42	1.83
16767--17355	143	4.2	144	85	4	743	25	21	9	42	1.83
17354--17455	12	8.5	12	77	15	104	6	24	10	57	1.57
17354--17455	36	2.8	35	82	10	125	6	24	10	57	1.57
17352--17451	24	4.2	24	83	7	125	7	25	11	57	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16764--17352	243	2.4	245	86	3	745	25	21	9	42	1.83

Tables:   1

The End!