Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011555.1 Corchorus capsularis cultivar CVL-1 contig11576, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18771

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
460--684
116
1.9
117
86
6
323
42
16
11
29
1.84
807--844
18
2.1
18
100
0
76
55
5
18
21
1.62
951--998
2
25.0
2
83
8
64
50
4
0
45
1.21
2294--3039
203
3.7
203
95
2
1354
34
13
12
39
1.83
3608--3644
13
2.8
13
87
0
56
16
43
8
32
1.77
3803--3833
13
2.4
13
94
0
53
32
6
48
12
1.67
10049--10082
12
2.6
14
81
18
54
8
35
0
55
1.31
10329--10376
25
1.9
25
83
8
62
39
0
2
58
1.10
10433--10493
31
2.0
31
84
6
81
32
18
4
44
1.71
10622--10699
38
2.1
37
88
7
113
12
16
12
57
1.65
11569--11868
22
13.5
22
68
17
129
39
10
16
34
1.82
11877--11931
22
2.7
20
77
5
56
45
10
16
27
1.80
11978--12426
22
20.6
22
69
14
200
37
11
15
35
1.83
11978--12435
44
10.5
44
70
10
237
37
10
16
34
1.83
12406--12456
22
2.3
22
82
0
57
56
3
13
25
1.54
12614--12644
2
15.5
2
100
0
62
48
0
0
51
1.00
13004--13062
29
2.1
28
90
3
91
8
28
11
50
1.68

Tables:   1

The End!