genome.fa.s11591.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011591.1 Corchorus capsularis cultivar CVL-1 contig11612, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87162

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7458--7503	21	2.2	21	96	0	83	52	8	21	17	1.71
7493--7712	92	2.4	92	98	0	422	37	16	20	25	1.93
7977--8001	2	12.5	2	100	0	50	52	0	0	48	1.00
16319--16349	16	1.9	16	93	0	53	29	3	12	54	1.53
20623--20662	21	1.9	21	85	10	55	25	7	12	55	1.63
24256--24338	2	43.5	2	71	13	59	51	2	1	44	1.22
24256--24340	34	2.5	34	81	9	95	52	2	1	43	1.21
24261--24328	27	2.5	27	78	4	75	52	2	1	42	1.25
27303--27340	19	1.9	19	89	5	58	44	13	10	31	1.77
33209--33248	21	1.9	21	89	0	62	12	17	10	60	1.59
36027--36141	49	2.4	48	81	5	133	28	19	4	47	1.68
38999--39235	35	6.9	35	85	3	284	36	9	18	36	1.83
38999--39200	66	2.9	68	83	5	237	36	8	17	37	1.80
39010--39199	101	1.9	101	92	0	317	35	7	17	38	1.79
39035--39243	101	2.1	98	81	7	231	36	9	17	36	1.83
44671--44710	18	2.2	18	86	4	53	45	5	20	30	1.72
49747--50057	156	2.0	155	95	3	559	37	9	14	38	1.79
59879--60189	157	2.0	158	97	0	588	37	9	14	38	1.79
62239--62278	18	2.2	18	86	4	53	45	5	20	30	1.72
63097--63478	190	2.0	190	100	0	764	27	12	20	39	1.89
69120--69159	20	2.0	20	95	0	71	35	17	30	17	1.93
74145--74171	12	2.2	12	100	0	54	85	0	0	14	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75066--75246	37	5.0	36	71	12	127	28	22	8	40	1.84
75019--75181	73	2.2	73	91	0	254	25	18	9	46	1.78
75057--75246	73	2.6	72	83	5	213	28	22	8	40	1.84
75127--75249	37	3.4	37	79	9	128	30	23	8	37	1.85
75129--75247	36	3.3	36	80	9	134	30	23	9	36	1.86
75238--75347	37	3.0	37	89	2	132	25	27	6	40	1.79
75256--75373	37	3.2	37	91	0	173	24	25	5	44	1.76
75489--75812	41	8.4	41	77	15	350	22	19	11	46	1.81
75452--75879	78	5.6	77	79	13	419	24	18	11	46	1.82
75590--75688	31	3.0	31	70	18	101	25	20	12	42	1.86
75512--75785	148	1.9	145	87	5	399	23	20	10	45	1.81
75817--76136	37	8.6	37	82	3	358	24	19	9	45	1.80
76115--76347	41	5.7	41	91	0	369	28	20	9	40	1.84
84981--85005	10	2.5	10	100	0	50	24	8	20	48	1.76

Tables:   1

The End!