Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011622.1 Corchorus capsularis cultivar CVL-1 contig11643, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65932

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
196--239
22
2.0
22
86
4
61
36
20
13
29
1.91
3027--3066
21
1.9
21
84
0
53
25
20
27
27
1.99
3110--3149
21
1.9
21
100
0
80
20
20
25
35
1.96
7896--7925
2
15.0
2
100
0
60
50
0
0
50
1.00
20749--20887
69
2.0
69
94
2
244
22
12
15
48
1.79
22778--23006
22
10.5
22
71
12
123
38
17
11
31
1.86
22738--22885
44
3.3
45
78
8
151
36
16
12
34
1.87
22760--22901
44
3.2
42
76
11
106
35
16
11
35
1.86
22779--23006
66
3.5
65
74
8
205
38
17
11
31
1.86
23040--23090
22
2.3
24
80
16
65
35
21
3
39
1.72
23051--23093
22
2.0
22
90
9
70
34
23
4
37
1.76
23053--23109
22
2.6
23
81
10
66
36
17
8
36
1.81
23157--23283
44
2.9
44
82
4
132
37
13
11
37
1.80
23157--23283
22
5.8
22
72
7
89
37
13
11
37
1.80
23159--23283
66
1.9
66
81
3
153
37
13
11
37
1.81
26606--26651
19
2.6
18
86
10
60
39
10
2
47
1.51
28905--28935
16
1.9
16
93
0
53
9
19
6
64
1.45
29202--29226
2
12.5
2
100
0
50
52
0
0
48
1.00
33229--33273
22
2.0
23
91
4
74
51
8
4
35
1.54
34952--34985
17
1.9
18
88
5
52
38
23
17
20
1.93
45783--45857
23
3.3
23
79
3
80
14
16
26
42
1.86
51803--51860
30
1.9
30
92
0
98
29
10
12
48
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55497--55591
48
2.0
48
97
0
181
29
16
26
27
1.97
56375--56408
14
2.4
14
90
9
52
41
8
2
47
1.50
59636--59700
30
2.1
31
91
2
105
50
3
15
30
1.59

Tables:   1

The End!