Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011652.1 Corchorus capsularis cultivar CVL-1 contig11673, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16379

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1148--1197
21
2.4
21
86
0
73
58
2
36
4
1.29
2215--2311
37
2.6
37
86
0
140
25
26
8
39
1.84
2328--2420
35
2.6
36
84
8
109
25
13
10
49
1.75
2427--2557
41
3.2
40
88
5
174
23
21
9
45
1.82
2668--2811
35
3.9
35
76
13
130
24
22
9
43
1.83
2734--2837
42
2.5
41
85
3
154
27
21
8
42
1.82
2876--3096
37
6.2
37
85
7
296
26
15
10
47
1.78
6724--6885
22
7.5
22
73
7
116
27
24
23
24
2.00
8578--8621
8
5.6
8
79
15
56
0
0
18
81
0.68
10457--10551
49
1.9
50
86
2
138
21
24
26
28
1.99
12040--12300
36
7.2
36
84
1
326
27
20
9
41
1.83
12040--12299
71
3.6
71
86
5
333
28
20
9
41
1.84
12040--12299
107
2.4
109
85
2
326
28
20
9
41
1.84
12293--12650
37
9.7
37
89
4
359
24
29
8
37
1.85
12311--12650
74
4.6
74
88
2
461
23
30
8
37
1.84
12311--12650
111
3.1
111
87
2
477
23
30
8
37
1.84
12500--12594
19
5.1
19
61
19
56
23
31
8
36
1.85
12766--12896
41
3.2
41
85
3
167
23
19
10
45
1.82
13007--13150
35
3.9
36
82
9
168
22
22
11
43
1.84
13073--13176
42
2.5
41
89
3
163
26
21
9
42
1.83
13215--13308
36
2.6
38
89
6
149
28
22
10
38
1.87
13296--13440
37
3.9
36
88
6
159
24
29
8
37
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13300--13440
74
1.9
74
82
5
178
24
28
8
38
1.85

Tables:   1

The End!