Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011789.1 Corchorus capsularis cultivar CVL-1 contig11810, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37860

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--80
2
40.5
2
97
2
153
0
48
0
51
1.00
2250--2306
23
2.5
23
100
0
114
26
15
22
35
1.94
11895--11947
15
3.3
15
75
14
52
49
35
15
0
1.45
11877--11935
3
19.7
3
89
0
64
44
33
22
0
1.53
12426--12527
30
3.4
30
78
14
104
38
29
22
9
1.86
12440--12556
3
39.0
3
72
6
67
37
30
23
7
1.83
12426--12465
21
1.9
21
84
0
53
35
32
25
7
1.84
19742--19798
18
3.3
18
72
22
59
40
0
8
50
1.33
19751--19799
17
2.9
16
82
17
64
44
0
8
46
1.33
19889--19913
11
2.3
11
100
0
50
80
0
20
0
0.72
27146--28578
321
4.5
323
87
2
1883
36
16
13
33
1.89
28757--31854
318
9.7
318
84
6
3569
35
17
14
32
1.90
28757--31854
638
4.9
634
82
6
3614
35
17
14
32
1.90
30653--32458
603
2.9
603
85
5
2293
35
17
14
32
1.91
31850--37860
320
19.0
321
80
6
6249
35
17
14
33
1.90
31850--37860
637
9.5
637
80
6
6348
35
17
14
33
1.90
31850--37860
957
6.3
954
83
6
5318
35
17
14
33
1.90

Tables:   1

The End!