Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012261.1 Corchorus capsularis cultivar CVL-1 contig12282, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22599

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
279--319
19
2.2
19
86
8
57
82
0
14
2
0.76
286--319
11
3.1
11
84
16
52
88
0
11
0
0.52
581--640
27
2.2
27
96
0
111
38
13
18
30
1.89
663--702
18
2.2
18
90
0
62
85
2
12
0
0.71
1732--1876
38
3.7
39
85
4
195
35
18
18
27
1.95
1731--2046
170
1.8
171
83
5
422
33
18
16
31
1.94
1901--2314
112
3.6
113
89
3
591
32
19
16
30
1.95
1917--2325
74
5.4
72
74
13
274
31
20
17
31
1.95
2337--2472
34
3.9
34
86
7
202
33
20
5
40
1.75
2337--2562
51
4.4
49
76
15
192
34
21
4
39
1.73
2380--2563
85
2.1
86
90
5
291
34
20
4
40
1.73
2465--2571
34
3.0
35
93
5
180
36
22
3
37
1.72
2547--2595
23
2.1
23
88
0
71
32
22
6
38
1.79
14472--14672
109
1.8
110
97
1
386
29
9
15
44
1.79
14753--14971
109
2.0
109
94
0
384
31
10
15
42
1.81
14472--15033
282
2.0
280
95
1
1000
36
9
12
40
1.77

Tables:   1

The End!