Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012317.1 Corchorus capsularis cultivar CVL-1 contig12338, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22675

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
131--217
45
1.9
45
92
0
147
35
17
19
27
1.94
561--681
33
3.7
33
93
0
197
14
41
33
11
1.81
7796--7824
2
14.5
2
100
0
58
48
0
0
51
1.00
14819--14898
30
2.7
30
88
0
115
36
21
25
17
1.95
16024--16165
36
3.9
36
91
0
212
28
23
10
37
1.88
16024--16165
73
2.0
72
88
1
212
28
23
10
37
1.88
16158--16281
37
3.4
37
82
5
144
25
28
8
37
1.84
16405--16652
41
6.4
40
77
12
266
23
21
10
43
1.84
16340--16595
117
2.2
115
85
4
349
25
18
10
45
1.81
16450--16671
76
2.9
76
97
1
410
24
19
10
45
1.81
16340--16631
117
2.6
116
83
6
334
25
19
10
44
1.82
16665--16883
37
5.9
36
84
7
219
25
19
10
45
1.81
16665--16883
73
3.0
73
80
7
212
25
19
10
45
1.81
16891--17042
41
3.7
41
83
5
175
27
21
11
39
1.88
17133--17248
40
3.1
40
63
25
90
21
26
10
41
1.85
17620--17740
40
3.2
40
68
27
120
23
23
9
43
1.82
17074--17775
71
9.9
71
93
2
1135
23
23
10
41
1.86

Tables:   1

The End!