Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012326.1 Corchorus capsularis cultivar CVL-1 contig12347, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16778

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
753--779
6
4.5
6
100
0
54
33
0
0
66
0.92
1340--1371
3
10.3
3
93
6
55
65
3
0
31
1.08
4370--4435
27
2.4
27
78
9
71
65
3
31
0
1.08
4311--4483
93
1.9
92
81
7
215
57
3
34
4
1.36
4529--4580
27
1.9
27
92
0
86
57
1
36
3
1.28
4494--4854
96
3.8
96
84
5
457
56
3
32
6
1.43
4494--4947
96
4.8
94
82
5
445
57
3
32
6
1.42
4811--4875
12
5.1
12
76
12
67
69
3
26
1
1.12
4515--4947
189
2.3
189
81
3
469
58
3
32
5
1.39
4985--5062
33
2.2
34
78
19
79
60
3
32
3
1.33
11526--11603
41
1.9
41
100
0
156
20
23
24
32
1.98
12013--12061
22
2.2
22
85
7
64
28
14
4
53
1.59
12213--12327
23
5.1
22
81
6
79
36
15
9
38
1.80
12248--12349
46
2.2
45
84
8
127
36
13
8
41
1.76
12265--12349
23
3.8
22
81
6
91
37
12
7
42
1.71
12354--12447
45
2.2
41
83
11
109
28
18
9
43
1.81
12224--12448
22
10.5
21
69
17
108
33
16
9
41
1.80
13786--13822
3
12.3
3
100
0
74
67
0
0
32
0.91

Tables:   1

The End!