Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012363.1 Corchorus capsularis cultivar CVL-1 contig12384, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24912

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11127--11174
23
2.1
23
84
3
62
43
6
0
50
1.27
12820--12862
22
2.0
22
90
9
70
37
4
9
48
1.56
12824--12872
21
2.2
23
85
7
66
38
6
12
42
1.67
15620--15659
19
2.0
21
86
13
59
50
0
30
20
1.49
16203--16889
37
18.9
37
86
4
829
44
9
19
27
1.80
16830--16889
29
2.1
27
90
6
93
43
10
16
30
1.81
16833--16858
12
2.2
12
100
0
52
34
15
19
30
1.93
16879--16995
36
3.3
33
76
12
99
49
11
13
24
1.76
17002--17388
37
10.8
37
84
6
481
42
6
25
25
1.80
16981--17388
143
2.8
144
89
4
592
42
6
25
25
1.79
17002--17407
69
5.6
73
85
8
507
41
7
25
25
1.82
17395--17528
37
3.7
36
88
5
157
35
9
26
29
1.88
17400--17541
36
4.0
35
88
5
178
35
9
26
28
1.87
19659--19717
23
2.5
24
83
2
66
22
25
6
45
1.76
20263--20298
19
1.9
18
88
5
54
41
2
22
33
1.68
24289--24322
13
2.8
12
86
8
50
85
8
5
0
0.75
24860--24906
23
2.0
23
95
0
85
55
8
6
29
1.55

Tables:   1

The End!