Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012423.1 Corchorus capsularis cultivar CVL-1 contig12444, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109840

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2906--2969
21
3.0
21
84
4
85
31
9
17
42
1.81
5390--5433
19
2.3
20
85
11
58
18
9
18
54
1.69
16665--16696
16
2.0
16
100
0
64
31
6
31
31
1.82
36309--36384
38
2.0
38
100
0
152
39
10
26
23
1.87
37477--37509
17
1.9
17
93
0
57
48
12
27
12
1.76
47104--47145
21
2.0
21
90
0
66
30
16
21
30
1.95
53857--53919
33
1.9
33
86
0
90
17
19
14
49
1.80
56772--57001
124
1.9
123
86
0
334
11
21
22
43
1.85
57076--57367
20
14.5
20
73
6
232
37
6
26
29
1.82
57077--57367
40
7.2
40
89
3
433
37
6
26
29
1.81
58902--59324
142
3.0
140
90
2
648
36
18
14
30
1.91
59725--61732
331
6.1
330
77
7
1932
32
15
16
35
1.90
59717--61757
669
3.1
655
85
5
2625
32
15
17
35
1.90
61140--62351
606
2.0
609
90
1
1898
32
13
17
36
1.89
61751--73367
332
34.9
331
78
5
10624
31
14
17
35
1.91
61747--73366
665
17.5
662
83
5
12161
31
14
17
35
1.91
73544--73572
1
29.0
1
100
0
58
0
0
0
100
0.00
73757--73828
23
3.1
23
87
0
108
16
13
23
45
1.83
78679--78752
39
1.9
38
91
2
121
40
13
40
5
1.67
79505--79556
26
2.0
26
88
0
77
19
28
9
42
1.82
85524--85566
20
2.2
20
100
0
86
60
9
20
9
1.55
100373--100468
33
2.7
35
84
9
115
21
22
14
40
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101571--101657
33
2.6
33
98
0
165
42
19
14
22
1.88
102656--102683
14
2.0
14
100
0
56
50
0
0
50
1.00
109261--109394
48
2.8
48
90
2
207
17
26
20
35
1.94
109803--109840
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!