Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012466.1 Corchorus capsularis cultivar CVL-1 contig12487, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65933

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--4479
665
6.8
663
82
6
4714
35
17
15
32
1.91
1--3149
333
9.4
332
88
2
4444
34
17
14
32
1.91
3164--4487
334
4.0
328
76
7
1069
35
16
15
33
1.89
4669--4874
68
3.0
68
97
0
385
44
15
11
28
1.81
17037--17070
2
17.0
2
100
0
68
50
0
0
50
1.00
27660--27715
29
1.9
29
88
0
85
19
23
16
41
1.90
29688--29740
5
9.8
5
76
15
52
58
16
16
7
1.60
51243--51286
21
2.1
21
86
0
61
22
27
11
38
1.88
51384--51480
32
3.0
32
86
4
124
12
38
34
15
1.85
51388--51491
32
3.2
32
85
6
122
11
37
35
15
1.84
64718--64748
2
15.5
2
100
0
62
48
0
0
51
1.00

Tables:   1

The End!