Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012525.1 Corchorus capsularis cultivar CVL-1 contig12546, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67882

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2904--2944
21
2.0
21
100
0
82
41
24
4
29
1.75
14592--14674
31
2.6
32
76
5
87
27
27
9
34
1.88
20233--20318
39
2.3
39
88
6
124
37
5
27
29
1.80
22806--22856
21
2.4
21
93
6
86
29
19
23
27
1.98
25321--25371
21
2.4
21
90
6
77
29
17
23
29
1.97
35523--35576
28
1.9
28
88
0
81
35
9
22
33
1.86
36637--36698
28
2.4
26
75
15
65
46
8
11
33
1.69
38470--38622
59
2.6
60
79
2
191
34
17
16
31
1.92
38653--38847
31
6.4
31
73
11
145
28
18
16
36
1.93
38683--38852
60
2.8
60
83
2
209
29
18
16
35
1.93
39261--39306
22
2.0
22
87
4
65
58
17
13
10
1.62
40705--40757
2
27.0
2
81
11
65
49
0
5
45
1.26
40695--40758
30
2.1
31
97
2
121
46
0
10
42
1.39
40988--41041
22
2.4
22
81
3
63
25
0
11
62
1.28
47151--47178
14
2.0
14
100
0
56
35
28
7
28
1.84
47224--47256
11
2.8
12
90
9
50
69
0
0
30
0.88
51965--52002
20
1.9
20
88
0
58
21
44
7
26
1.79
58614--58671
6
9.5
6
85
9
55
1
29
6
62
1.31
58620--58671
18
2.8
18
82
2
68
0
30
7
61
1.24
59924--60013
45
2.0
45
86
0
126
23
26
18
31
1.98
60479--60705
33
6.8
34
97
1
399
30
6
25
37
1.80
62610--62697
44
2.0
44
95
0
158
45
11
6
36
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63481--67882
333
13.3
330
86
5
5769
32
14
17
35
1.90
63481--67875
995
4.4
986
87
4
5985
32
14
17
35
1.90

Tables:   1

The End!