Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012532.1 Corchorus capsularis cultivar CVL-1 contig12553, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17252

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2516--2551
10
3.9
10
82
17
51
44
0
16
38
1.48
3756--3832
27
2.7
27
86
8
100
18
15
36
29
1.92
3842--4054
36
6.2
36
77
15
189
29
13
24
32
1.93
3859--4054
69
2.8
69
76
13
206
29
13
25
32
1.93
3947--4008
27
2.3
27
85
0
79
30
12
24
32
1.93
3974--4048
39
1.9
39
94
0
132
30
12
24
33
1.91
4013--4122
27
4.2
27
78
11
138
24
16
26
32
1.96
3947--4165
117
1.9
116
91
0
357
26
14
26
32
1.94
4091--4330
36
7.2
36
68
24
127
28
14
23
33
1.94
4129--4435
27
11.2
27
66
20
138
27
14
24
33
1.94
3911--4287
189
2.0
180
89
4
574
28
14
24
32
1.94
4148--4294
51
3.0
51
79
8
180
29
14
21
34
1.93
4250--4330
36
2.2
36
93
4
137
28
14
23
33
1.94
4196--4412
87
2.5
87
93
0
362
27
13
24
34
1.93
4344--4412
36
1.9
36
93
0
120
24
13
28
33
1.93
4283--4567
155
1.8
155
92
0
480
26
13
25
34
1.93
4095--4572
242
1.9
244
89
3
728
27
14
24
34
1.94
4495--4613
36
3.3
36
90
0
193
27
10
26
34
1.90
7203--7244
8
5.1
8
81
16
50
83
16
0
0
0.65
7200--7238
12
3.2
12
88
3
60
87
12
0
0
0.55
7200--7238
13
3.2
13
92
7
64
87
12
0
0
0.55
7202--7244
21
2.0
21
95
0
77
83
16
0
0
0.64

Tables:   1

The End!