Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012615.1 Corchorus capsularis cultivar CVL-1 contig12636, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26954

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5259--5513
22
11.6
23
73
12
128
41
9
15
33
1.79
5295--5359
21
2.8
24
86
11
91
41
9
15
33
1.79
5343--5510
44
3.8
43
73
7
142
41
9
13
35
1.77
5768--5848
25
3.5
24
77
14
73
40
6
11
41
1.65
5768--5848
23
3.5
24
79
17
82
40
6
11
41
1.65
5890--5951
22
2.8
22
76
11
63
33
12
17
35
1.88
5897--5982
45
1.9
45
83
4
111
34
11
16
37
1.85
5898--6114
22
9.9
22
69
11
104
40
11
14
34
1.81
6299--6367
31
2.3
31
92
5
115
47
14
17
20
1.82
6495--6604
31
3.6
31
87
2
152
30
16
11
41
1.84
6495--6631
60
2.2
61
82
7
154
30
17
13
38
1.88
6495--6631
31
4.5
31
81
7
111
30
17
13
38
1.88
6675--6724
3
16.7
3
95
0
73
66
6
0
28
1.15
7711--7789
31
2.5
31
85
0
104
36
7
16
39
1.77
7918--7984
31
2.2
31
89
5
102
22
16
11
49
1.78
8240--8286
24
2.0
24
91
0
76
29
8
12
48
1.71
9057--9194
70
2.0
70
97
0
258
26
14
21
37
1.92
15025--15166
73
1.9
73
100
0
284
49
19
12
18
1.79
15671--15715
18
2.4
18
81
7
54
55
8
0
35
1.31
19764--19793
15
2.0
15
93
0
51
73
3
3
20
1.12
23835--24052
107
2.1
105
82
5
260
42
8
6
42
1.61
25373--25510
3
46.0
3
100
0
276
33
33
0
33
1.58

Tables:   1

The End!