Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012793.1 Corchorus capsularis cultivar CVL-1 contig12814, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61544

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7688--7713
1
26.0
1
100
0
52
0
0
0
100
0.00
8164--8203
19
2.1
19
100
0
80
10
10
30
50
1.69
10281--10305
12
2.1
12
100
0
50
16
8
16
60
1.58
10597--10638
20
2.1
21
86
8
61
57
7
7
28
1.52
16634--16669
13
2.8
13
91
0
54
61
19
16
2
1.47
18533--18569
3
12.3
3
100
0
74
67
0
0
32
0.91
19500--19534
16
2.2
16
94
0
61
42
17
28
11
1.83
20344--20378
16
2.2
16
94
0
61
42
17
28
11
1.83
19104--20797
844
2.0
843
98
0
3271
37
16
14
32
1.88
22598--22740
71
2.0
73
91
2
236
51
13
20
14
1.77
23915--23941
5
5.4
5
100
0
54
62
18
0
18
1.32
27856--27904
21
2.3
21
96
0
89
44
12
32
10
1.75
28750--28794
21
2.1
22
83
4
56
20
37
6
35
1.79
28985--29021
14
2.6
14
86
0
56
48
5
21
24
1.71
29042--29116
32
2.3
32
81
0
87
13
29
46
10
1.76
45855--45898
15
2.9
15
86
0
61
15
22
22
38
1.92
52244--52294
17
3.2
17
69
25
56
29
9
0
60
1.28
52230--52293
31
2.0
32
96
3
121
25
9
1
64
1.33
59748--59790
21
2.0
21
95
0
77
41
18
13
25
1.88

Tables:   1

The End!