genome.fa.s12850.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012850.1 Corchorus capsularis cultivar CVL-1 contig12871, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51001

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94--118	2	12.5	2	100	0	50	48	0	0	52	1.00
2739--2793	24	2.2	26	77	6	60	23	5	7	63	1.41
4347--8322	645	6.2	648	80	6	4146	31	14	17	36	1.90
4328--8322	321	12.5	320	80	6	3967	31	14	17	36	1.90
8134--8511	189	2.0	189	85	5	514	35	10	16	37	1.82
7834--8822	506	2.0	500	83	7	1243	33	14	16	35	1.89
8328--10418	320	6.6	320	78	7	1611	32	14	17	36	1.89
8336--10492	634	3.4	627	80	6	2157	32	14	17	35	1.90
12407--14084	321	5.2	321	82	3	1893	31	14	18	35	1.91
15622--15673	23	2.3	23	86	0	68	23	9	13	53	1.68
15859--19584	322	11.6	320	76	9	2984	32	14	16	36	1.89
15859--20814	637	7.8	635	76	10	3202	32	14	16	36	1.89
20228--21040	334	2.5	325	79	7	784	34	14	15	35	1.89
21007--21081	38	2.0	38	97	0	141	52	5	13	29	1.62
21008--21092	38	2.2	38	89	4	127	51	5	14	28	1.65
21913--22508	322	1.9	322	81	3	725	32	14	16	36	1.89
26782--26857	36	2.1	36	92	0	125	31	28	22	17	1.96
26800--26876	36	2.2	35	84	6	95	35	29	19	15	1.93
27835--27875	8	4.7	9	88	11	59	0	0	9	90	0.46
27835--27874	1	40.0	1	84	0	53	0	0	7	92	0.38
32253--32357	33	3.2	33	86	6	135	12	40	35	11	1.79
32420--32533	33	3.5	33	81	0	102	13	28	39	18	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42173--42271	50	2.0	50	94	6	173	37	8	16	38	1.78
46727--46761	16	2.2	16	94	0	61	28	34	11	25	1.91
48496--48564	33	2.1	33	100	0	138	49	7	28	14	1.70

Tables:   1

The End!