Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012992.1 Corchorus capsularis cultivar CVL-1 contig13013, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35163

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--75
2
37.5
2
100
0
150
0
50
0
49
1.00
3494--3620
63
2.0
63
98
0
245
37
20
16
25
1.93
5191--5217
1
27.0
1
100
0
54
0
0
0
100
0.00
5517--5785
133
2.0
133
97
0
502
39
14
8
38
1.75
6948--6986
20
1.9
21
94
5
71
58
10
0
30
1.31
6993--7149
74
2.1
74
95
2
280
39
8
30
21
1.84
10001--10057
30
1.9
30
89
7
89
31
19
7
42
1.78
12484--12548
18
3.3
18
67
29
51
7
24
46
21
1.77
16316--16364
21
2.3
21
85
0
62
26
26
32
14
1.94
17672--17704
2
16.5
2
100
0
66
51
0
0
48
1.00
21276--21306
6
5.3
6
96
3
55
51
12
0
35
1.40
25730--25922
33
5.7
33
78
12
205
23
40
25
9
1.84
25759--25922
69
2.4
67
93
5
278
23
40
25
10
1.86
26825--26858
8
4.1
8
85
7
50
58
14
2
23
1.50
26931--26965
10
3.7
9
88
11
52
82
0
0
17
0.66
29032--29133
33
3.2
33
86
4
138
37
17
11
33
1.86
29157--29277
33
3.7
33
77
4
127
38
19
12
29
1.89
29144--29284
66
2.1
66
93
0
210
40
20
11
27
1.87
30765--30798
8
4.1
8
85
7
50
23
2
14
58
1.50
32598--32715
33
3.6
33
77
4
121
31
12
19
36
1.89
32592--32730
66
2.1
66
90
0
224
28
12
20
37
1.90
32741--32828
33
2.7
33
89
0
122
31
11
17
39
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32739--32843
33
3.3
31
84
6
113
34
10
17
38
1.84

Tables:   1

The End!