Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013195.1 Corchorus capsularis cultivar CVL-1 contig13216, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73150

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5853--6611
35
21.7
34
84
6
880
33
16
10
38
1.84
5854--6611
70
10.8
70
88
2
1085
33
17
10
38
1.84
5852--6611
105
7.2
105
89
3
1093
33
16
10
39
1.84
9679--9783
33
3.2
33
81
5
131
24
8
20
45
1.79
9732--9811
33
2.4
33
83
8
92
31
10
20
38
1.85
23142--23225
42
2.0
42
86
4
116
23
42
25
8
1.82
25945--26152
102
2.0
103
92
3
348
34
12
15
37
1.85
27008--27041
6
5.7
6
100
0
68
17
35
29
17
1.93
34955--35023
32
2.2
32
97
0
129
42
8
7
42
1.63
35432--35596
31
5.3
31
82
5
172
17
20
24
37
1.94
35432--35607
62
2.8
62
82
1
219
17
20
26
36
1.94
41917--41946
2
15.0
2
100
0
60
0
50
0
50
1.00
43649--43711
30
2.1
30
88
5
92
17
36
15
30
1.91
45947--45986
21
1.9
21
89
0
62
35
20
20
25
1.96
53624--53680
30
1.9
30
89
7
89
21
26
19
33
1.97
62182--62227
21
2.2
21
84
0
56
15
30
43
10
1.81
67050--67077
14
2.0
14
100
0
56
14
35
14
35
1.86

Tables:   1

The End!