Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013353.1 Corchorus capsularis cultivar CVL-1 contig13374, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5961

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
355--460
26
4.0
27
78
11
121
55
4
20
18
1.60
516--574
22
2.7
22
84
5
66
54
6
18
20
1.66
537--613
29
2.7
29
72
18
72
55
5
19
19
1.61
539--698
35
4.6
34
82
9
171
54
3
23
19
1.58
744--998
22
12.2
20
70
16
98
54
4
20
21
1.62
830--1003
22
8.0
22
77
9
153
54
4
19
21
1.62
741--1003
42
6.3
43
78
10
233
54
4
20
21
1.61
817--982
64
2.6
64
83
5
201
54
4
19
21
1.63
782--1003
86
2.6
85
83
9
265
53
4
20
21
1.63
950--1016
7
9.4
7
77
3
53
58
1
19
20
1.48
970--1026
14
4.1
14
81
0
69
57
3
21
17
1.54
765--1024
86
3.1
84
80
10
221
53
4
20
21
1.63
1009--1063
19
3.0
18
76
23
53
61
3
18
16
1.48
1084--1208
42
3.0
42
85
3
144
53
4
20
21
1.63
1106--1208
22
4.8
22
76
9
97
54
5
16
23
1.64
1102--1208
43
2.5
42
89
1
160
54
5
17
22
1.64
1365--1411
24
1.9
25
86
4
69
59
2
19
19
1.48
2219--2277
15
3.9
15
91
4
93
25
32
15
27
1.95
2219--2277
30
2.0
30
96
0
109
25
32
15
27
1.95

Tables:   1

The End!